Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1548 ATGGAGTTTATAAGACTGTGTGATGCAGTGAATGAGAAAGTCCTTGTTTTCAGCCAATTCATTGATACCTTGTGCTTAATTAAGGACCAACTCGAATCAGCCTTTAATTGGTCTGAGGGGACAGAAGTGTTGTATATGTATGGCAGGCTTGACCAAAAGCAAAAACAGTCCCTCATTCATAGTTTCAATGATGCAAATAGCCCAGCAAAGGTGTTGCTTGCTTCTATAAAAGCATCTTCTGAAGGCATTAACTTAATTGGAGCTTCAAGAGTCGTGCTTCTTGATGTTGTTTGGAACCCCTCAGTGGAAAGGCAAGCTATTTGCCGAGCATATAGACTTGGGCAAACAAGGGTTGTTTATACTTATCATCTTCTTGCACAGGGCACCCCTGAATGCACAAAATATtgtaaacaagagaaaaagaaccgGTTATCTGAACTGGTTTTCTCAAATAGAAATGCTGAAAGTGATAAGCTCAAGAGTTGTGGAGTAATGTTGGAGGATAGAGTTCTTGATATCATGGTTCAGCATGAAAAGCTCAAGGATATGTTTGGGGAATGTCTGGTTCAACCAAAGGAGAGAGATTTGGAGACTTTGGGCCCTTGA 606 0.3927 MEFIRLCDAVNEKVLVFSQFIDTLCLIKDQLESAFNWSEGTEVLYMYGRLDQKQKQSLIHSFNDANSPAKVLLASIKASSEGINLIGASRVVLLDVVWNPSVERQAICRAYRLGQTRVVYTYHLLAQGTPECTKYCKQEKKNRLSELVFSNRNAESDKLKSCGVMLEDRVLDIMVQHEKLKDMFGECLVQPKERDLETLGP 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1548 201 Gene3D - 1 194 IPR027417 -
Ssu3g1548 201 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 2 170 IPR001650 -
Ssu3g1548 201 SMART helicmild6 29 114 IPR001650 -
Ssu3g1548 201 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 9 184 IPR027417 -
Ssu3g1548 201 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 1 197 IPR044567 GO:0080188
Ssu3g1548 201 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 4 1 197 - -
Ssu3g1548 201 CDD SF2_C_SNF 1 125 - -
Ssu3g1548 201 Pfam Helicase conserved C-terminal domain 8 114 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1548 Ssu-Chr3 41317340 41317945 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g1548 11 158 RAD5 or RAD16-like Gene Family AT5G05130 36.913 6.09e-21 88.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1548 K10875 - gmx:100812737 362.459