LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ssu3g1547	ATGTATCAGGGGGCACCTGTTGCTTGCAGGACGCGTAGCAAGAAAAGAAGGGTATCTGAACGTGGTTTTGAGTGTTTAGGAGGGAAAGAGGATGATCCTATTGAAATCAGTGGCAGTGATGATGGCAGTGAGGCTGAAGAGGGGTTGAGGCATTCTGAGAAGAAGAGGTTTCGGGTTAAAGAGGAAGAGAGGAGTGAGGAGGGTAAAGGGTGTGTTCTGTTTGCTGATTATAAGGTTGAGAACTTTCTTGATGATGACTGTAGCGGTGGACGTGAAAACCCGGTTATATTGACGGATGATTCAGATGGGGATGGTAAGAGTGAGGAGGAACATGGCGTGGCTGGAAGTAGTTCAGATGATGGAGAGACTAGTGATGAAGATTTTCAGgttgatgatgatggtgatgacgGGAGTGAATACCCGAGCAGTGAGGACAGTGATTCTTCTTATGATGATAAGAGGGAGAGGGAGGGATACAAGAGGGTGAGAAAGGTGGAGAGTGAAACTGAAAGCAGTGGAGTTTGCAGAAGGAAAGGTGAAAGGAAAGATAATGGGCAGgtagaggaggaggaagaggagcAATGGATTGGTGCTGATTGTGCTAGTGCGACCTCTAGTAAATCCGAGATTTGTAAGGAGGAAGCAAGGAATGCAGCACAGGAACATGAAGCAAAGAGAGTAGAAAGTGTCGATGCTGATGCAAAAGTCTTTGGTGATCACTGGGAAAGTACAGGTTGCTCTATGCCTTCTGAAGGTGAGGCACTAGGggataagaagaaaagagataGAGGTCATCATAGTGCCAATGCTAATACCTGCATGAATCTTGATGACCATGAAGGCAAAGAGCATCATCACGACAAAGGAAGAGGTGTGAGAAGCGTTTCTTTTTTGCCAAAATGCCAAGAGAATATAGGAGATTCGGCTAAAGTTGTTATTAAAGAGgacaagaagagaagggaacATAAACATGGGTTTAATAGCAATAATCGTCAGAAGAAGGCAAGGGTAGTGGTGGATGATGAAACTGGTGACAAAGATGAGTTGCATGAGGTCCTAAGGATGCCATCTGGAAGAAAGgaccaatgttttaaattttttactgaATGCTTTTGGGGCGAGCATGATTCTGTTAAGGATGATTCAAATGAGTTGGAAGAAAAGGATGATGATGTTGATCAAGGTCAGACTCAGCCATTAGCTTGTAGGGAGACAATCCCTTTGGATTGGAACTTTATGAAGGAAGAACCTATTGAAAAATCGGAGTCTGAGAAGGAGTTAGATATGTTGTGGGGTGAATTGGATATGTTGCTTATAGCTGAAGAAATTGGGTCCCAGGATGGTAGTATAGGGACAAATGAAGCAATAGAAAACGAAGAAAGTCCAGCCTTGCATTGCAAGCATGACACTATTTTTAACGAGGAGATTGGGATATATTGCAGATGGTGTGGTTGGGTTGCCActgaaatcaaatatatcacGCCACCATTTGTAAGCACGGTGGATTCTGAAAGATCAGGTAGAAGGGTGTCATCTGGTGTAGTGGACACCTCACAATTTGATGGGGCTGTGTTTAATGATTCTGGTGATGACTCTCAGGCAGTTTGGTATCACAATGAAGGCTCAGTTTGGGACCTTATTCCTGACATAAAACAAAGCTTGTATCCTCATCAACAAGAAGGTTTTGAGtttatttggacaaatttggcAGGAACCACTGACCTTGCCAAGTTGAAGAGGGTTGACCCGTGTAGTGAAGGTGGCTGCATTATTTCTCATGCTCCTGGAACGGGAAAGACAAGGTTGACCATGGTGTTTCTTCAGACGTATTTGCAACTGTTTCCAAAGTGTCTACCTGTTATCATTGCTCCTGCCAACATATTGCTTACTTGGGAAGATGAGTTGAGGAAGTGGAACATAGGAATTCCATTCCATAACATGAACAATGCTGAATTATCAGGAAAAGAACAAGCCATTAATGAATTTGACTGGTCTGGCAATCAAAGGCAGAACAAGGATGGCATACGAATGGTGAAGTTGTGCTCATGGTACAAAGAGAAGAGCATTCTATTAATCAGCTACAATTTGTATGAGAAGCTAGCAGGGGGCAAGTCTGAAGTTGATGGggagaaagtgaagaaaaacagaaagatgaaaaaagagaagaaacgTGCAAGGGCTAGGAAGTACATTGAAAGTGCAATGGGAAAGGTTTTGCGTGACTATCCTGGTTTGCTAGTTCTTGATGAAGGGCACACACCTCGGAATCAGCAAAGTTGTATTTGGAAGGTTCTTTATGAAAGTAGATCTCAGAAGCGAATCCTTCTTTCAGGAACTCCTTTCCAGAACAATTTTCTGGAACTCTACAATATTCTGTGCTTAATGAAACCATCCTTTCCTGACAGCATACCACAAGAACTCAAGAAATTCTGCCAAAGTAGACTAATGCAGGTAGGGAAAGCGTCAAAAGAATGGAGTTGGGAACCTGTAGGCGTTTCCTCTGGAAATGGAAATTCAGCTGATGAGAAAATAAACCAGCTAAAATTGCTTATGAATCCCTTTGTTCATGTTCACAAAGGTAGCATTCTTCAGAAGAACCTTCCTGGGTTGAGAGATTGTGTGCTGGTTTTGAAGCCAGACAGCTTGCAGCAAGAAACTCTAGAGAGCATTGAATGTTCTCAATACTTTGTGAACTTTGAGCACAAGTTGGCCTTGGTCTCAGTCCATCCATCCCTTTTCCTCAACTGCTCTCTGTCAAAAAAGAAGAATCTGTTGTTGACAAGGATCGGTTGGAAAAGCTTAGATTGA	2808	0.4031	MYQGAPVACRTRSKKRRVSERGFECLGGKEDDPIEISGSDDGSEAEEGLRHSEKKRFRVKEEERSEEGKGCVLFADYKVENFLDDDCSGGRENPVILTDDSDGDGKSEEEHGVAGSSSDDGETSDEDFQVDDDGDDGSEYPSSEDSDSSYDDKREREGYKRVRKVESETESSGVCRRKGERKDNGQVEEEEEEQWIGADCASATSSKSEICKEEARNAAQEHEAKRVESVDADAKVFGDHWESTGCSMPSEGEALGDKKKRDRGHHSANANTCMNLDDHEGKEHHHDKGRGVRSVSFLPKCQENIGDSAKVVIKEDKKRREHKHGFNSNNRQKKARVVVDDETGDKDELHEVLRMPSGRKDQCFKFFTECFWGEHDSVKDDSNELEEKDDDVDQGQTQPLACRETIPLDWNFMKEEPIEKSESEKELDMLWGELDMLLIAEEIGSQDGSIGTNEAIENEESPALHCKHDTIFNEEIGIYCRWCGWVATEIKYITPPFVSTVDSERSGRRVSSGVVDTSQFDGAVFNDSGDDSQAVWYHNEGSVWDLIPDIKQSLYPHQQEGFEFIWTNLAGTTDLAKLKRVDPCSEGGCIISHAPGTGKTRLTMVFLQTYLQLFPKCLPVIIAPANILLTWEDELRKWNIGIPFHNMNNAELSGKEQAINEFDWSGNQRQNKDGIRMVKLCSWYKEKSILLISYNLYEKLAGGKSEVDGEKVKKNRKMKKEKKRARARKYIESAMGKVLRDYPGLLVLDEGHTPRNQQSCIWKVLYESRSQKRILLSGTPFQNNFLELYNILCLMKPSFPDSIPQELKKFCQSRLMQVGKASKEWSWEPVGVSSGNGNSADEKINQLKLLMNPFVHVHKGSILQKNLPGLRDCVLVLKPDSLQQETLESIECSQYFVNFEHKLALVSVHPSLFLNCSLSKKKNLLLTRIGWKSLD	935

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ssu3g1547	935	MobiDBLite	consensus disorder prediction	97	116	-	-
	Ssu3g1547	935	MobiDBLite	consensus disorder prediction	1	67	-	-
	Ssu3g1547	935	PANTHER	SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED	3	923	IPR044567	GO:0080188
	Ssu3g1547	935	Pfam	SNF2-related domain	565	888	IPR000330	GO:0005524\|GO:0140658
	Ssu3g1547	935	MobiDBLite	consensus disorder prediction	17	36	-	-
	Ssu3g1547	935	MobiDBLite	consensus disorder prediction	276	291	-	-
	Ssu3g1547	935	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	545	812	IPR027417	-
	Ssu3g1547	935	MobiDBLite	consensus disorder prediction	120	142	-	-
	Ssu3g1547	935	MobiDBLite	consensus disorder prediction	43	67	-	-
	Ssu3g1547	935	PANTHER	SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 4	3	923	-	-
	Ssu3g1547	935	MobiDBLite	consensus disorder prediction	84	291	-	-
	Ssu3g1547	935	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	580	798	IPR014001	-
	Ssu3g1547	935	MobiDBLite	consensus disorder prediction	209	238	-	-
	Ssu3g1547	935	SMART	ultradead3	550	806	IPR014001	-
	Ssu3g1547	935	MobiDBLite	consensus disorder prediction	146	185	-	-
	Ssu3g1547	935	MobiDBLite	consensus disorder prediction	253	267	-	-
	Ssu3g1547	935	Gene3D	-	532	827	IPR038718	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ssu3g1547	Ssu-Chr3	41313600	41317307	Tandem

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	SNF2	Ssu3g1547		SNF2_N	2.3e-19	CL0023

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ssu3g1547	K10875		-	gmx:100812737	1158.67