Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1546 ATGTATCAGGGGGTTCCCGTTGCTTGCAGGACGCGTAGCAAGAAGAGAAGGGTGGATGAGGGTAGTTTCATAATGGGTGGGAAGAGGAAAAGGGTAGTTGAagatgacgatgatgatgattaCGTGATTTGCTTAGAAGGTGAAGGGTGTGCAAGTGGGAAAAAAGGGTGTGGATTTGCGCCTTCGACTTCATCGTCGGATGCTTTGAAGAAGAGTGGTTTCGAGTTTTTGGGAGAGGATGAGGATGATCGTGTGGAGGTGATTGACATCGAAGATGGCAGTGATCCTGAAGAGGGGTTGAGGCATTGTGAGGTTAAAGTTGAGAGCTTTGGGGATGATGAGTTTGGTGGTAGACCTGAAAAGCCCATTGTGTTGACGCATGATTCGGACGGCGCGGATGaaagtagtagtagtagttctGATGATGGATATGATTCTATTTCATCTTCAATGGAGAGCGAGAATGGGGAAACAAGTGATGAAGATTTTCaggttgatgatgatgagaGTGAATGCTGGAGCAGTAAGGAGAGTGATTCTTCTTATGATGACGAGAGTGGGGGATATGGCAAGATGGTAAAGGAGAGGATGAGAAAGGTGGAGAGTGAAACTGAAAGCAGTGGAGTTCGGAGAAGAAAagttaaaaggaaagaaaataggcAGCTAGAGGAGGAGCAATGGATTGGTGCTGATTGTGCTAGTGCGACATCTAGTAAATCAGAGATCCGTAAGGAGAAGAAGGCAGAAGAGAAACATGAGGCAAAGAGAGTAGAAAGTGTCAATGCTGATGCCGGAGTCTTTGGTGATCACTGCCAAGGTTCAGGTTGCTCTAAGCCTTCTGAAGCCGAAGCACTAGACAGAGGTCATCAAAATAAAGATGGGTTCTATAGCAACTACAGTGAGAAGAAGGTAAGGGTGGTGGATGATGATGAAGCTGGTGAGGAAGACGAGCTGCATAAAGCCCAAAGGGTGCCATCTGGGACAAAGGACCAAGGTTTTGAATCCCTTGGGGGAAAGCATGATTCTGTTAAAGATGATTCAAATGATATTTTGTGGAACGAATTGGATATGTTGCTTCAAGGTGGAGAAATCGGGACAGGAGATTCAACTGTGGGCAAGAAGAGTGGTAAAAGTAATAATGCCAATGCCAGTGCTTATGACTGTATGAATCTTGATGGACATAAAGGAAAAGAGCGTCGTCACAACAAAGGGACTGGTGTGAGGAGTGTTTCTTCTTTGCCAAAATGCCAAGAGAATATAGAAGATTTGGCTAAAGGTGTAATAAAGGAGGACAAGAAGGGAAGGCAGCATAAAGATGGGTTTAAATGGTTTAATAGCAATAATCGTGAGAATAAGGTAAGGGTGGTGGATGATGAAACTGGTGACAAACATGAAGTCCTAAGGATGCCATCTAGAGCAAAGGATCGAGGTTTTAAATTCTTTACTGAATGCTTTTGGGGCAAGCATGATTCTGTTAAAGATGATTCAAATGAGTTGGAAGAAAAGGATGATGATGTTCATCAGGGTCAGACCTGTGGGGAGGGAATCCCTTTGAATTGGAatgataagaagaaagaaaatattgaacaaACAGAATCTGAGAAGGAGTTAGATATGTTGTGGGGCGAATTGGATATGTTGCTTCGAGCTCAAGAAATTGGGTCCCAGGTTGGTAATACAGGGACAAATGAagcaagagaaaatgaagaaagtcCAGCCTCCCATTGCAAGCATGATACTATTCTTAACGAGGAGATTGGGATATATTGCAGATGGTGTGGTTGGGTTGCCACTGAGATCAGATTTATTGATCCACCGCTTGTGGATTATGAAAGATCGGGTAGAAGGGTGTCATTTGGTGGAGTGAACACCTCACAATTTGATGGAGCTTTGTTTAATGATTCTGGTGATGACTCAGAGTCAGTTTGGTCTCGCAATAAAGGTTCAGTTTGGGACCTTATTCCTGACATAAAACAAAGCTTGTTCCCTCACCAACAAGAAGGTTTTGAGtttatttggacaaatttggcAGGAACCACTGACCTTGCCAAGTTGAAGAGGGTGGACCCGTGTAGTGAAGGTGGCTGCATTATTTCTCATGCTCCTGGAACGGGAAAGACGAGGTTGACCATGGTGTTTCTTCAGACATATTTGCAGCTGTTTCCAAAGTGTCTACCCGTTATCGTTGCTCCTGCCAACATATTGCTTACTTGGGAAGATGAGTTCAGGAAGTGGAGCATAGGCATTCCATTTCATAACATGAACAGTGCTGATTTGTCAGGAAAAGAACATGCCATTAATGAGGTTGACTGGTCTGGCAATCAACAGCAGAATAAGGATGCCATTCGAATGGTGAAGTTGTGCTCATGGTACAAAGAAAAGAGCATTCTATTAATCAGCTACAATTTGTATGAGAAGCTAGCCGGGGTAAAGTCTGAAGGTGATGGGGcaaaggagaagagaaatagaaagatgaaaaaagagaagaaacgTGCAAGGACTAGGCAGTGCATTGAAACTGCAATGGGAAAGGTTCTTCGCGAATATCCTGGTTTGCTGATTCTTGATGAAGGGCACACACCACGGAACCAGCGTAGTTGTATTTGGAAGGTTCTTTCTGAAAGTAGAACTCAGAAGCGAATCCTGCTTTCGGGGACTCCTTTCCAGAACAATTTTCTGGAACTCTACAATATTTTGTGCTTAATGAAACCATCCTTTCCTGATAGCATTCCACAAGAACTCAAAAAGTTTTGCCAAAGCAAACTAATTCAGGAAAGGAAAGTTTCAAAGGATGTGAATTGGGAACCCATTTCTTCTGGAAATCGAGCTGATGAGAAAATAAACCAGCTAAAATTGTTGATGAATCCCTTTGTTCATGTTCACAAAGGTAGCATTCTTCAAAAGAACCTTCCTGGGTTGAGAGATTGTGTGCTGGTTTTGAAGCCTGACAGTTTGCAGCAAAAGATTCTGGAGAGCATTGATTGTTCTCAAAACACACTCAACTTTGAACACAAGTTGTCCTTGGTCTCTGTTCATCCGTCCCTTTTCCTCAACTGCTCTctgtcaaaaaaagaagaatctgTTGTTGACAAGGATCAGTTGGAAAAGCTTAGATTGAACTCTTATGAAGgggtcaaaacaaaatttttgaagGAATTTGTAAAGCTGTGCGATGCTATTAATGAGAAGGTGCTTGTGTTTAGCCAATTCATTGACACGTTAAACTTAATCAAGGACCAACTCCAGTCAGCCTTTAATTGGTCTGTGGGCACGGAAGTATTGTATATGCATGGCAAGCTCGACCAAAAGCAAAAACAGTTACTCATTCATAGCTTCAATGATGCAAATAGCCAAGTAAAGGTGTTGCTTGCTTCTATAAAATCATGTTCTGAAGGCATTAGCTTGATTGGAGCTTCAAGGGTCGTACTTGTTGATGTTGTTTGGAACCCCTCAGTGGAAAGGCAAGCTATTTGCCGAGCATATAGACTTGGACAAAAGAGGGTTGTTTATACTTACCATCTTCTTGCACAGGATACCCCTGAATGCGCCAAATATTGTAAACAAGCCGAAAAGGACCGGTTATCTGAACTGGTGTTCTCAAACAGAAATGCTGAAAATGATAAGAGTAGTGGAGTAAAGTTTGAGGATACAGTTCTTGATCTCATGGTTCATCATGTAAACCTCAAGGACATGTTTGCTGAATGTCTGGTTCAGCCGAAGGACAGAGATTTGGAGACTTTGGGCGGCTGA 3750 0.4051 MYQGVPVACRTRSKKRRVDEGSFIMGGKRKRVVEDDDDDDYVICLEGEGCASGKKGCGFAPSTSSSDALKKSGFEFLGEDEDDRVEVIDIEDGSDPEEGLRHCEVKVESFGDDEFGGRPEKPIVLTHDSDGADESSSSSSDDGYDSISSSMESENGETSDEDFQVDDDESECWSSKESDSSYDDESGGYGKMVKERMRKVESETESSGVRRRKVKRKENRQLEEEQWIGADCASATSSKSEIRKEKKAEEKHEAKRVESVNADAGVFGDHCQGSGCSKPSEAEALDRGHQNKDGFYSNYSEKKVRVVDDDEAGEEDELHKAQRVPSGTKDQGFESLGGKHDSVKDDSNDILWNELDMLLQGGEIGTGDSTVGKKSGKSNNANASAYDCMNLDGHKGKERRHNKGTGVRSVSSLPKCQENIEDLAKGVIKEDKKGRQHKDGFKWFNSNNRENKVRVVDDETGDKHEVLRMPSRAKDRGFKFFTECFWGKHDSVKDDSNELEEKDDDVHQGQTCGEGIPLNWNDKKKENIEQTESEKELDMLWGELDMLLRAQEIGSQVGNTGTNEARENEESPASHCKHDTILNEEIGIYCRWCGWVATEIRFIDPPLVDYERSGRRVSFGGVNTSQFDGALFNDSGDDSESVWSRNKGSVWDLIPDIKQSLFPHQQEGFEFIWTNLAGTTDLAKLKRVDPCSEGGCIISHAPGTGKTRLTMVFLQTYLQLFPKCLPVIVAPANILLTWEDEFRKWSIGIPFHNMNSADLSGKEHAINEVDWSGNQQQNKDAIRMVKLCSWYKEKSILLISYNLYEKLAGVKSEGDGAKEKRNRKMKKEKKRARTRQCIETAMGKVLREYPGLLILDEGHTPRNQRSCIWKVLSESRTQKRILLSGTPFQNNFLELYNILCLMKPSFPDSIPQELKKFCQSKLIQERKVSKDVNWEPISSGNRADEKINQLKLLMNPFVHVHKGSILQKNLPGLRDCVLVLKPDSLQQKILESIDCSQNTLNFEHKLSLVSVHPSLFLNCSLSKKEESVVDKDQLEKLRLNSYEGVKTKFLKEFVKLCDAINEKVLVFSQFIDTLNLIKDQLQSAFNWSVGTEVLYMHGKLDQKQKQLLIHSFNDANSQVKVLLASIKSCSEGISLIGASRVVLVDVVWNPSVERQAICRAYRLGQKRVVYTYHLLAQDTPECAKYCKQAEKDRLSELVFSNRNAENDKSSGVKFEDTVLDLMVHHVNLKDMFAECLVQPKDRDLETLGG 1249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1546 1249 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 652 934 IPR027417 -
Ssu3g1546 1249 MobiDBLite consensus disorder prediction 169 225 - -
Ssu3g1546 1249 MobiDBLite consensus disorder prediction 494 520 - -
Ssu3g1546 1249 MobiDBLite consensus disorder prediction 371 385 - -
Ssu3g1546 1249 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 4 3 1245 - -
Ssu3g1546 1249 MobiDBLite consensus disorder prediction 90 346 - -
Ssu3g1546 1249 MobiDBLite consensus disorder prediction 238 259 - -
Ssu3g1546 1249 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 3 1245 IPR044567 GO:0080188
Ssu3g1546 1249 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 687 905 IPR014001 -
Ssu3g1546 1249 MobiDBLite consensus disorder prediction 366 385 - -
Ssu3g1546 1249 Pfam SNF2-related domain 673 992 IPR000330 GO:0005524|GO:0140658
Ssu3g1546 1249 Gene3D - 639 954 IPR038718 -
Ssu3g1546 1249 SMART helicmild6 1079 1164 IPR001650 -
Ssu3g1546 1249 Pfam Helicase conserved C-terminal domain 1055 1164 IPR001650 -
Ssu3g1546 1249 MobiDBLite consensus disorder prediction 494 509 - -
Ssu3g1546 1249 MobiDBLite consensus disorder prediction 282 309 - -
Ssu3g1546 1249 Gene3D - 971 1236 IPR027417 -
Ssu3g1546 1249 CDD SF2_C_SNF 1021 1175 - -
Ssu3g1546 1249 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1052 1205 IPR001650 -
Ssu3g1546 1249 MobiDBLite consensus disorder prediction 94 128 - -
Ssu3g1546 1249 SMART ultradead3 657 913 IPR014001 -
Ssu3g1546 1249 MobiDBLite consensus disorder prediction 130 154 - -
Ssu3g1546 1249 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 851 1204 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1546 Ssu-Chr3 41259152 41263553 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g1546 1062 1194 RAD5 or RAD16-like Gene Family AT5G43530 39.850 5.00e-18 88.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Ssu3g1546 SNF2_N 9e-22 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1546 K10875 - gmx:100807262 1320.84