Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1538 ATGTCCTTCAATCAATCAAAGTCCGACAAGAGCGACGCTGTGTACCGAAAATCCGGGCGATCCGCCAGCTTCAGTCAGCAGCGAGGTTCCTCCGGCGGTGCGTACGGCAAGGCCGGCGGCGGTGGCGGCGGCGCCGGGCCTTCTCCGTCGCTCTCCTCTGGCTGGAGCTTCAATCAGCAGCGAGGTTCCTCCGGTGGTGCGTATGGCAAGGCCGGCAGCGGAGGTGGCAGTTCCGGGCCTTGTCCGTCGCTCTCCTCTGGCCGGAGATTTAACAAGAAGTCTAATAATAATGCACAAGGTGAGCAATCTAGGGTAAACCCTACACCGGTGAATTTGGCTGATTCTAATAGTACTTATGCGGCCCGGAATGTACCAAATGGTTCCCATGTACAGCCGCAGATTCATGGAGGATCTGATGCACCAGTTACAAATGCAACTGCCGAGCCTTCTGAATCGGCAGCTGTGCAGAGGAGCACCAGACCTGTTCCAAAAGCTCCTACTTCTCAACCTTCGGCCATGAGTTCTGATCCAGCGGCTCCTCCAACCCCTGCTAATGATGCATCTAAGGCATTCCCTTTCCAATTTGGATCTATTAGTCCTGGCTTTATGAATGGGATGGCAATTCCTGCTCGCACAAGCTCAGCTCCTCTTAATATAGATGAGCAGAAGCGTCATCAAGCTCAACATGATTCTTTTAGAGCTGCAACTACAGTGCCAACACCTCCTGTTCCAAAGCAGCAGGCAGTGAAGAAGGATACTGGTGTTGCTGACCAATCTAATAATGCTGGGGAGGTTCATGCTGGGACTAGGACAAAAAAGGATACTCAAGTGTCACCTTTACCCCCAGCTAGCCAGATGCAGAAGCCTTCTGTCATTCCTTTAACTGGAATTTCAATGCCAATGCCATATCACCAGTCACAGGCATCTGTACACTTTGGTGGTCCTAATCCACAGATTCAATCTCAAGGTAAGTCATCGGCATCTCTTCAGATGCCATTACCAATACATTTACCGATTGGAAGTGCTGCACAGGTGCAACAACAGGTTTTTGTTCCAAGCCTTCAACCTCATCCTATCCATCCTGAGGGAATCATGCATCAAGGCCAAAACATGGGTTTCACTCCTCAAATTGGCCCTCCGTTGGGCCACATGGGTATTGGCATCAGCCCACAATATCCTCCCCAGCAAGGAGGAAAGTTTGCTGGTCCTTGTAAAACCACTCCTGTCAAGGTAACTCATCCTGAGACAAATGAAGAACTAAGACTTGATAAAAGGGCAGATGCATATTCAGATGGTGGGTCATCTGGTTCAAGGCCTCATTCTGGCACGCCTTCTCAATCTCAGCCTGCCCAGCAATCTGCAGCTTCTCGTCCTATTAATTACTATCCATCCACTTCCTACAGTACCAATTCTCTATTTTATCCAACTCCTAGTTCTCTTCCATTAACAAGTAGCCAGATAACTCCTAACTCTCAGCCACCCAGTTTTAATTATGCAGTGAGCCATGGTCTGCAAAATGTTACTTTTGTAAATTCATCATCTCATAATTCCCTGCCTGTTAATAAAGCTGGCACTTTGAAGACTACGTCAAAGGGGAAAAAGAAACGAAAAGCGATTCTTCAGAAGGCTGATGCTACTGGGTCAACATCTGATCTTTATAGTGCATATAAGGGACCtgtggaaaagaaagaaactgtTGTAAGTTCAGAGAAAACAGAAAGAGCTTCCACTTCTGGAAATTTAGAGCAGTTGCCTACTGATGCTGCTGAGCCTGATGCTACAGCAAGTGCGCAATATAAGCAGAGTAAAGCTGAACTTGATGATTGGGAGGATGTTGCTGACATGTCTACTCCAAAGCTAGAAGTTTCAGATAAAACTGAACAGGTTAGTGATGGAAGTGCAGTTACTGTCAAAAAGTACTCTCGAGATTTCCTTTTGAAATTTGCAGAGCAATGCACTGATCTTCCTAAAGGGTCTGAAATCACCGCAGACAGAGCTGAGGTTAGTGATGGAAGTGCTGTTACTGCCAAAAAGTACTCTAGAGATTTCCTTTTGAAATTTGCGGAGCAATGCACTGATCTTCCTGAAGGGTTTGAAATCACCGCAGACATAGCTGAGGCTTTGATGAGTGGTATTGTTAGTTCTCATGTAATTGAACGTGATTCACATTCTTCTACTGGAAGAATTATTGATAGGTCAGGTAGTATGTCTCGTATGGATCGTCGTGGTAGTGGTGTTATTGAGGAAGACAAATGGAGTAAAGTTTCTAATGCATTTCATTCCGGTATGCGTTTGGATGGCATTGGAGGTAATGCAGGATTTCGACCTGGCCAAGGAGGCAATTTTGGTGTTTTAaggaatccacgtacacagacACCTCTGCAATATGCTGGAGGGATTCTTTCTGGTCCAATGCAATCCATGGTAAATCAGGGAGGAATGCAAAGAAATAGCCCTGATGGAGAAAGGTGGCAGCGTGCTACTAGCTTCCAGCAGAGGGGTTTAATTCCATCTCCTTCTCTTCAAACTCCTTTACAGATGATGCACAAAGCTGAGAAGAAGTATGAGGTTGGTAAAGTGACAGATGAGGAACAGGCGAAGCAGAGGCAATTGAAGGCTATATTAAACAAGTTAACTCCTCAGAATTTTGAGAAGCTTTTTGATCAGGTTAGAGCAGTCAATATTGACAATGTAGTCACTCTCAATGGTGTCATCTCGCAAATCTTTGAGAAGGCCTTGATGGAGCCTACTTTCTGTGAAATGTATGCCAATTTCTGTTTTCATCTGGCGGCTGCGTTGCCTGATCTCAGTCAAAACAATGAAAAGATAACTTTTAAGAGATTATTGTTAAACAAGTGCCAGGAAGAATTTGAGAGGGGCGAAAGAGAGCAAGAAGAAGCTAATAAGGCTGATGAGGGTGAGGTGAAGCTGTCTAAtgaggaaagagaagagaaacgAACCAAGGCAAGAAGACGTATGTTGGGTAATATCAGATTGATCGGAGAActatataagaagaaaatgttgaCAGAGAGGATAATGCATGAATGCATCAAGAAGTTACTGGGTCAGTCTCAGGATCCAGATGAAGAAGATATTGAAGCTTTGTGCAAGCTAATGAGTACTATTGGGGAGATGATTGACCATCCCAAAGCCAAGGAACATATGGATGCATATTTTGAAATGATGAGAACATTTTCAATCAACATGAATTTATCTCCTAGGGTGAGGTTCATGTTGAAGGATGCCATTGATTTGAGAAAGAATAAATGGcaacaaagaagaaaagttgAAGGTCCAAAGAAGATTGAGGAGGTGCACAGAGATGCTTCTCAAGAGAGGCTGGCCCAAGCTGGTAGGTTGGGTCGCGGTCCAGGCAACAATCCACCTAGAAGAACCCCTATGGATTTTGGTCCAAGAGGGTCATCCATGTTATCTCCTAATTCTCAGATGGGTGGGCTGCGTGGATTGCCTACTCAAGTTCGCGGGTTTGGTTCTCAGGATGTTCGCATGGATGATAGGCAAACTTATGAGGCTAGGACATTGTCAGTTCCCTTGCCTCAAAGACCTTTAGGCGATGAGTCAATAACCTTGGGACCACAGGGTGGTCTTGCTAGAGGAATGTCCATTAGAGGTCCACCTGCAGTTTCAAGTTCAACTGGTCTTAATGGTTACAATAATTTGCCAGATCGCACTTCATACAGCTCTAGGGAGGACCCTGCATCAAGATATACTCCAGATAGATTTGCTGGTTCAACTGCTTATGATCAATCTAGTGTTCAAGATCGTAATATGAATTATGGCAATAGAGACTTGAGAAATGCAAATAGGATTCTTGATATACCTGTTGTAAATTCACCACCTGCCAGAATGCAAGGGACAACAGTCTCCCAGAATACTTCTTCAGAGCGACCGGAGGACATGTCCATGGCAGCAATCAGAGAGTACTATAGTGCTAGAGATGTGAATGAAGTTGTTCTATGCATCAAAGATCTGAACTCTCCAAGTTTTCACCCTTCGATGGTTTCTGTCTGGGTCACGGACTCCTTTGAGAGGAAGGACACAGAAAGAGATCTTTTGGCCCAGCTGCTTGTCAACCTTGTGAAATCTCAGGATGGACCCTTGAGTCAAGCCCAGCTCATCAAAGGGTTTGAATCTGTTCTCAGTACTTTGGAAGATGCGGTTAATGATGCCCCCAAAGCACCAGAGTTTCTTGGCCGTGTTTTTGCCAAAGCTATAACAGAGCATGTAGTCTCTTTGAAAGAGATTGGGCGGTTAATACATGAGGGGGGAGAGGAACCGGGCAGCCTCTTAGAAGGTGGACTTGCAGCTGCGGTTCTTGGAAGCACCTTGGAGGTAATAAAAATGGAGAATGGTGATGCTGTTTTGAGTGAGATCTGTGCAAGCTCCAACTTGCAGTTGGAGACCTTCCGGCCACCGGCACCTCTTACATCAAGAAAGCTAGAGAAATTTATTTAG 4479 0.445 MSFNQSKSDKSDAVYRKSGRSASFSQQRGSSGGAYGKAGGGGGGAGPSPSLSSGWSFNQQRGSSGGAYGKAGSGGGSSGPCPSLSSGRRFNKKSNNNAQGEQSRVNPTPVNLADSNSTYAARNVPNGSHVQPQIHGGSDAPVTNATAEPSESAAVQRSTRPVPKAPTSQPSAMSSDPAAPPTPANDASKAFPFQFGSISPGFMNGMAIPARTSSAPLNIDEQKRHQAQHDSFRAATTVPTPPVPKQQAVKKDTGVADQSNNAGEVHAGTRTKKDTQVSPLPPASQMQKPSVIPLTGISMPMPYHQSQASVHFGGPNPQIQSQGKSSASLQMPLPIHLPIGSAAQVQQQVFVPSLQPHPIHPEGIMHQGQNMGFTPQIGPPLGHMGIGISPQYPPQQGGKFAGPCKTTPVKVTHPETNEELRLDKRADAYSDGGSSGSRPHSGTPSQSQPAQQSAASRPINYYPSTSYSTNSLFYPTPSSLPLTSSQITPNSQPPSFNYAVSHGLQNVTFVNSSSHNSLPVNKAGTLKTTSKGKKKRKAILQKADATGSTSDLYSAYKGPVEKKETVVSSEKTERASTSGNLEQLPTDAAEPDATASAQYKQSKAELDDWEDVADMSTPKLEVSDKTEQVSDGSAVTVKKYSRDFLLKFAEQCTDLPKGSEITADRAEVSDGSAVTAKKYSRDFLLKFAEQCTDLPEGFEITADIAEALMSGIVSSHVIERDSHSSTGRIIDRSGSMSRMDRRGSGVIEEDKWSKVSNAFHSGMRLDGIGGNAGFRPGQGGNFGVLRNPRTQTPLQYAGGILSGPMQSMVNQGGMQRNSPDGERWQRATSFQQRGLIPSPSLQTPLQMMHKAEKKYEVGKVTDEEQAKQRQLKAILNKLTPQNFEKLFDQVRAVNIDNVVTLNGVISQIFEKALMEPTFCEMYANFCFHLAAALPDLSQNNEKITFKRLLLNKCQEEFERGEREQEEANKADEGEVKLSNEEREEKRTKARRRMLGNIRLIGELYKKKMLTERIMHECIKKLLGQSQDPDEEDIEALCKLMSTIGEMIDHPKAKEHMDAYFEMMRTFSINMNLSPRVRFMLKDAIDLRKNKWQQRRKVEGPKKIEEVHRDASQERLAQAGRLGRGPGNNPPRRTPMDFGPRGSSMLSPNSQMGGLRGLPTQVRGFGSQDVRMDDRQTYEARTLSVPLPQRPLGDESITLGPQGGLARGMSIRGPPAVSSSTGLNGYNNLPDRTSYSSREDPASRYTPDRFAGSTAYDQSSVQDRNMNYGNRDLRNANRILDIPVVNSPPARMQGTTVSQNTSSERPEDMSMAAIREYYSARDVNEVVLCIKDLNSPSFHPSMVSVWVTDSFERKDTERDLLAQLLVNLVKSQDGPLSQAQLIKGFESVLSTLEDAVNDAPKAPEFLGRVFAKAITEHVVSLKEIGRLIHEGGEEPGSLLEGGLAAAVLGSTLEVIKMENGDAVLSEICASSNLQLETFRPPAPLTSRKLEKFI 1492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1538 1492 Coils Coil 950 970 - -
Ssu3g1538 1492 ProSiteProfiles MI domain profile. 1304 1428 IPR003891 -
Ssu3g1538 1492 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4G-LIKE 670 1482 - -
Ssu3g1538 1492 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4G-LIKE 511 662 - -
Ssu3g1538 1492 SUPERFAMILY ARM repeat 1299 1488 IPR016024 -
Ssu3g1538 1492 MobiDBLite consensus disorder prediction 49 66 - -
Ssu3g1538 1492 MobiDBLite consensus disorder prediction 221 288 - -
Ssu3g1538 1492 MobiDBLite consensus disorder prediction 412 428 - -
Ssu3g1538 1492 MobiDBLite consensus disorder prediction 1288 1306 - -
Ssu3g1538 1492 Pfam MIF4G domain 868 1090 IPR003890 GO:0003723|GO:0005515
Ssu3g1538 1492 MobiDBLite consensus disorder prediction 252 288 - -
Ssu3g1538 1492 Pfam MA3 domain 1312 1417 IPR003891 -
Ssu3g1538 1492 MobiDBLite consensus disorder prediction 1213 1240 - -
Ssu3g1538 1492 Gene3D - 1296 1492 - -
Ssu3g1538 1492 MobiDBLite consensus disorder prediction 18 32 - -
Ssu3g1538 1492 MobiDBLite consensus disorder prediction 561 603 - -
Ssu3g1538 1492 MobiDBLite consensus disorder prediction 392 461 - -
Ssu3g1538 1492 SMART ma3_7 1305 1419 IPR003891 -
Ssu3g1538 1492 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4 GAMMA 148 499 IPR045208 GO:0003743
Ssu3g1538 1492 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4 GAMMA 670 1482 IPR045208 GO:0003743
Ssu3g1538 1492 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4 GAMMA 511 662 IPR045208 GO:0003743
Ssu3g1538 1492 MobiDBLite consensus disorder prediction 1 198 - -
Ssu3g1538 1492 MobiDBLite consensus disorder prediction 959 988 - -
Ssu3g1538 1492 MobiDBLite consensus disorder prediction 724 745 - -
Ssu3g1538 1492 MobiDBLite consensus disorder prediction 1285 1306 - -
Ssu3g1538 1492 MobiDBLite consensus disorder prediction 1117 1141 - -
Ssu3g1538 1492 MobiDBLite consensus disorder prediction 78 175 - -
Ssu3g1538 1492 MobiDBLite consensus disorder prediction 434 461 - -
Ssu3g1538 1492 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4G-LIKE 148 499 - -
Ssu3g1538 1492 SUPERFAMILY ARM repeat 862 1092 IPR016024 -
Ssu3g1538 1492 SMART if4_15 868 1090 IPR003890 GO:0003723|GO:0005515
Ssu3g1538 1492 Gene3D - 868 1103 - -
Ssu3g1538 1492 MobiDBLite consensus disorder prediction 1211 1264 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1538 Ssu-Chr3 40819184 40900782 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g1538 1 517 Eukaryotic Initiation Factors Gene Family AT3G60240 41.199 6.63e-83 299
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g0786 2 41257978 41261232 Ssu3g1538 3 40819184 40900782 PCT