Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1533 ATGCATCAGAAGAAATCAGAGGTCCAGATCGGAAAAGAAAGCGTAGGCGTCTCTTCCGATTTCAATCCGTCGCCCCCGCTCCAATACCAGAAACACCCCTACCACCGCCACCAACAGCTCTACCCCCAAATCGCAATCGACATATCCCCACTGCAACAGCGCAGCGCCGCGCCGCAGCGAACCCCTGCCCCTTCCCTCTCGAAACAgaaacaccaccaccaccaccaccaccaaccgCCGCCCCTCTTCAAGTCCCACAACGCCGCCTTCTTCTCCGTAACGGTCGCCGCGAAGAGCGCCGCGTTCCGCGCGCTGCGGCGCGTGAGGCGCCAGCGCGCGTTGCTGCTACTCGCGGTCCCGCTCCTCTACCTCTACTTCCTCGTCTCGCGCTCCTTCATCTTGGACCTCCTCTCCGCGGTCGCGTTCTCCGCGGCGCTGGTCTTCTCCCTCAACCTCGCGTTCCCACTGCCGCTCCGGTCCATCCGGCTGAAGGCGCCGTCGGCCGTGGTGGCCCGCCCCGCGCCGCCGCTGCCGGTGTTCTGGACGATCGGGTCGCGGCCGAAGTCGGAGAAGCGCGTGGCGTCGGGGTGCTGGGTGCAGGTGTTCGGGAACGGCGACGTTTACGAGGGGGAGTTTCACCGAGGGAAGTGTTCGGGGAGCGGGGTGTATTACTACAGCAGGAGTGGGAGGTACGAGGGGGATTGGGTGGATGGGAAGTACGATGGGTACGGGGTGGAGACTTGGGCTCGTGGGAGTCGCTACCGCGGGTGTTACCGCCAGGGGCTGAGGCACGGGTTTGGGGTGTACAGGTTTTACACCGGGGATGTGTACGCGGGAGAGTGGTCCAATGGACAGAGTCACGGCTGTGGGGTTCACACGTGCGAGGATGGGAGTAGGTATGTTGGGGAGTTTAAATGGGGTGTTAAGCATGGCCTCGGTCATTACCACTTCAGAAATGGAGATACATATGCGGGTGAATACTTTGCGGACAAGATGCATGGTTTTGGCATATATCGTTTTGCAAATGGCCATCGTTATGAAGGAGCCTGGCATGAAGGTAGAAGGCAAGGACTTGGAATGTATACATTTAGAAATGGCGAAACCCAATCTGGTCACTGGCAAAATGGAGTCCTTGACATTCCAAGCACACAGACCACCACTTATCCTGTTTCTCATGTTGGTGTCTATCATTCCAAAGTATTCAATGCAGTGCAGGAAGCAAGACGAGCAGCAGAGAAAGCCTATGATGTGGCTAAGGTAGACGAAGGTGTGAACAGAGCTGTAGCAGCTTCTAATAGAGCAGCCAATGCAGCTAGAGTAGCTGCTGTCAAGGCTGTGCAAAAGCAGATGCATCATGTTAACAATGAAAGCTTCTCAATTCCTGTTGTGTGA 1392 0.5596 MHQKKSEVQIGKESVGVSSDFNPSPPLQYQKHPYHRHQQLYPQIAIDISPLQQRSAAPQRTPAPSLSKQKHHHHHHHQPPPLFKSHNAAFFSVTVAAKSAAFRALRRVRRQRALLLLAVPLLYLYFLVSRSFILDLLSAVAFSAALVFSLNLAFPLPLRSIRLKAPSAVVARPAPPLPVFWTIGSRPKSEKRVASGCWVQVFGNGDVYEGEFHRGKCSGSGVYYYSRSGRYEGDWVDGKYDGYGVETWARGSRYRGCYRQGLRHGFGVYRFYTGDVYAGEWSNGQSHGCGVHTCEDGSRYVGEFKWGVKHGLGHYHFRNGDTYAGEYFADKMHGFGIYRFANGHRYEGAWHEGRRQGLGMYTFRNGETQSGHWQNGVLDIPSTQTTTYPVSHVGVYHSKVFNAVQEARRAAEKAYDVAKVDEGVNRAVAASNRAANAARVAAVKAVQKQMHHVNNESFSIPVV 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1533 463 Gene3D - 190 237 - -
Ssu3g1533 463 Gene3D - 238 283 - -
Ssu3g1533 463 Gene3D - 330 398 - -
Ssu3g1533 463 Gene3D - 284 329 - -
Ssu3g1533 463 PANTHER - 66 454 - -
Ssu3g1533 463 SUPERFAMILY Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain 202 298 - -
Ssu3g1533 463 MobiDBLite consensus disorder prediction 1 26 - -
Ssu3g1533 463 Pfam MORN repeat 254 276 IPR003409 -
Ssu3g1533 463 Pfam MORN repeat 300 322 IPR003409 -
Ssu3g1533 463 Pfam MORN repeat 208 226 IPR003409 -
Ssu3g1533 463 Pfam MORN repeat 231 253 IPR003409 -
Ssu3g1533 463 Pfam MORN repeat 277 299 IPR003409 -
Ssu3g1533 463 Pfam MORN repeat 346 367 IPR003409 -
Ssu3g1533 463 Pfam MORN repeat 323 345 IPR003409 -
Ssu3g1533 463 MobiDBLite consensus disorder prediction 56 80 - -
Ssu3g1533 463 SMART morn 275 296 IPR003409 -
Ssu3g1533 463 SMART morn 206 227 IPR003409 -
Ssu3g1533 463 SMART morn 344 365 IPR003409 -
Ssu3g1533 463 SMART morn 321 342 IPR003409 -
Ssu3g1533 463 SMART morn 298 319 IPR003409 -
Ssu3g1533 463 SMART morn 229 250 IPR003409 -
Ssu3g1533 463 SMART morn 252 273 IPR003409 -
Ssu3g1533 463 PANTHER PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE RELATED 66 454 - -
Ssu3g1533 463 MobiDBLite consensus disorder prediction 12 26 - -
Ssu3g1533 463 SUPERFAMILY Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain 273 377 - -
Ssu3g1533 463 MobiDBLite consensus disorder prediction 66 80 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1533 Ssu-Chr3 40751571 40757187 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g1533 200 406 Acyl Lipid Metabolism Gene Families AT2G41210 33.810 9.20e-30 121
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1533 - - gmx:100816562 728.398
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g1533 3 40751571 40757187 Ssu4g2543 4 64405212 64407359 PCT
Ssu2g0791 2 41336324 41341873 Ssu3g1533 3 40751571 40757187 PCT