Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1531 ATGCTAGTGATGTTAGTTAACAAAGAAGCTAAGATGACAGCTTTGAGTGCAATTTTCCGGAAATGGAGAATATCTGCACCACCTCAATGGAATATAAGCGGTGAACCATGTAGTGGAGTGGCCATTGATGCTACTTCATTGGATGATGATGAATTTAGTATGCTTATCAAGTGTGAATGTTCATATCAAAATGACTCGGCTTGCCACATTACCCAACTGAAAGTTTTTGCAATGGATGTTATTGGTGAGATCCCAGAAGAGCTCTGGACTTTGACATACCTCTTCAACCTgaATTTGAACCAAAATTACTTGACAGGTTCACTTTCTTCATCCATTGGCAATCTAAGTCACATGCAATACCTGGGATTAGCAGCTAACTCTTTATCTGGAGGGCTTCCAAAGGAATTAGGAAATCTCACTGACTTAAGATCCCTGTCTTTAATGGAAAACAACTTCTCTGGATCACTTCCACCTGAGTTAGGAAATCTAGTGAAATTAGAACAACTCTATATTTCCAGCTCTGGGATTAGTGGTGAGATTCCTAAGACATTTGCTGATCTTGTAAACCTCAGGATAGTGTGGGCAACAGATATCCAACTCAAAGGCAGAATACCTGAATTTATAGGGAATTGGTCTAAGCTTAATACTTTAAGATTTCAAGGGAATTCTTTTGAAGGTCCAATACCATCATCATTTTCCAACTTGACAAATCTAGTCGAATTGAAGATAAGTGAATTATCTTTGCAGAGCTCCTCACTGtattttatgagaaatttgAAGTCTCTAATGATCCTTGTGTTGAGGAACAATAATATTTCTGACACAATTCCAACCTATCTTGGggagtttcaaaatttaacCCAGCTgGATTTAAGCTTCAACAACCTAATTGGACAGATTCCAAACTCacttttcaatttgaattcACTTTCTTATTTGTTTCTTGGTAATAACAAGCTAAACGGTACAATTCCACCAAAAAAAAGTGCCTCTTTGCTCAACATAGACTTATCATATAACAACTTAAGAGGGAGCCTCCCTTCTTGGGTCACTGAACAAAATTTACAACtCAATTTAGTTGGCAACAACTTCCAAGCAGAGAATACAGAGAGCAGTGGCATGCCTTCAGGATTAAGCTGCCTTCAGCGTAACTTTCCTTGCAATCGTGGCACTGGAATCTATTACAACTTTTTGATCAATTGTGGTGGTCCTCAGATTACATCTTCCAATGGAATTGTCTATGAAAGTGATAACGAAGCACTTGGTCCAGCTACATATTTCGTGACAGACACACAGAGGTGGGCGGTTAGTAATGTGGGGTACTTTAGTGGAAGCAGCAACTTTAGTGAATATATAAGTTCTGTGCCAAATCAATTCACTGGTACTACAGATTCCAACATGTTCCAAACAGCGCGGCTGTCTGCTTCATCATTGAGATATTATGGCTTGGGACTGGAAAATGGTAACTACAGTGTGAGGCTCCAGTTTGCTGAAAGCAAAATTCTGGATTCTGCCTCATGGAAAAGCCTTGGGAGGCGAGTCTTTGATGTTTACATTCAGAGGAATCTTGTTTTAAAGGATTTTGATATACAAAGGGAAGCTGGCCAGGTGTCTTTCAAAGCTGTTTCAAAGGACTTTAGAGCTCAAGTATTGGAAAACTACCTTGAGATCCACTTTTTTTGGGCTGGAAAAGGGACTTGTTGTATACCTGATCAATATACTTATGGACCCTTAATTTCAGCCATCAGTGCAACCCCAGATTTCATTCCCTCTGTTAGTAACAAGCCTCCTACcagtaaaaagaaaaggactGGTCTGAAAGTGGGAGTAGCTCTTGGCATTGGAGTTTTAAGCATTGTTTCTATTTCTGTGCTTTATTGCCTTATTCAAAGAAGACGACATCATGTTGATGAAAGTGAAGAGCTCTTAGGTATAGAAGCTAGACCATACACTTTCAGTTACTCTGAGTTAAAGAATGCCATAAATGACTTTGATTCTGCCAATAAGCTTGGAGAAGGTGGATTTGGCCCTGTTTATAAgGGGACACTTAATGATGGAAGAGTGGTTGCTGTTAAGCAACTATCTACACGATCTCGTCAAGGAAACTCAGAGTTCATAACTGAGATTGCTATTATTTCGGCAGTGCAACATCGTAACCTCATTAAGTTACATGGATGCTGCATTGAGAGGGATGAACGGCTTCTTGTGTATGAGTATTTAGAAAATGGGAGTCTTAATCAACTACTATTTGGAAAAGTAAGTTCAATCCTCAATTGGCCAATGCGATTTGGTATCTGCAGGGGCATTGCACGAGGCCTAGCTTATCTCCACGAAGAATCACAGCTACGTATAATTCACCGTGACGTAAAGGCTAGTAATATTCTGCTTGACCATCAATTTGTCCCTAAAATATCGGATTTTGGTTTGGCTAAGCTATTTGATCAGGAAAAAACCCACTTAAGTACTAATCTTGCTGGGACAATGGGATATTTGGCACCGGAATATGCTTGGTGTGGGCACCTCACAGAGAAAGCAGATGTATTTTCCTTTGGTATTGTAGCTCTAGAGATTGTTAGTGGAAGGTCGAATTCGGATCCTAATTCCATCTTGGACAATGAAGGAAAAAAGACTTTTCTTCTAGAATGGGCTTGGAACGTCTACATGAACAACAATGAAATTGAATTGGTGGATTCTAGACTGCAAGAGTTTGATGAGACAGAAGTGAAACGTGTCATTGGCATTTCTCTATTGTGCACACAAGCCTCGCCTTCCATGCGGCCATCCATGTCCCGCATAGTGGCAATGCTTTCCGGTGATGTTGAAGTGACCAGTGTAACATCAATGCCTGAGTACTTGGCTTATATAAACTTTGATGATGTAACTGACTTCACGAATACAACAAATGGAGTTGACGTGAGTCATCACACATCATCAAACACCAGAATTAGGAGTGGTGTCAACTAA 2964 0.3914 MLVMLVNKEAKMTALSAIFRKWRISAPPQWNISGEPCSGVAIDATSLDDDEFSMLIKCECSYQNDSACHITQLKVFAMDVIGEIPEELWTLTYLFNLNLNQNYLTGSLSSSIGNLSHMQYLGLAANSLSGGLPKELGNLTDLRSLSLMENNFSGSLPPELGNLVKLEQLYISSSGISGEIPKTFADLVNLRIVWATDIQLKGRIPEFIGNWSKLNTLRFQGNSFEGPIPSSFSNLTNLVELKISELSLQSSSLYFMRNLKSLMILVLRNNNISDTIPTYLGEFQNLTQLDLSFNNLIGQIPNSLFNLNSLSYLFLGNNKLNGTIPPKKSASLLNIDLSYNNLRGSLPSWVTEQNLQLNLVGNNFQAENTESSGMPSGLSCLQRNFPCNRGTGIYYNFLINCGGPQITSSNGIVYESDNEALGPATYFVTDTQRWAVSNVGYFSGSSNFSEYISSVPNQFTGTTDSNMFQTARLSASSLRYYGLGLENGNYSVRLQFAESKILDSASWKSLGRRVFDVYIQRNLVLKDFDIQREAGQVSFKAVSKDFRAQVLENYLEIHFFWAGKGTCCIPDQYTYGPLISAISATPDFIPSVSNKPPTSKKKRTGLKVGVALGIGVLSIVSISVLYCLIQRRRHHVDESEELLGIEARPYTFSYSELKNAINDFDSANKLGEGGFGPVYKGTLNDGRVVAVKQLSTRSRQGNSEFITEIAIISAVQHRNLIKLHGCCIERDERLLVYEYLENGSLNQLLFGKVSSILNWPMRFGICRGIARGLAYLHEESQLRIIHRDVKASNILLDHQFVPKISDFGLAKLFDQEKTHLSTNLAGTMGYLAPEYAWCGHLTEKADVFSFGIVALEIVSGRSNSDPNSILDNEGKKTFLLEWAWNVYMNNNEIELVDSRLQEFDETEVKRVIGISLLCTQASPSMRPSMSRIVAMLSGDVEVTSVTSMPEYLAYINFDDVTDFTNTTNGVDVSHHTSSNTRIRSGVN 987
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1531 987 SUPERFAMILY Protein kinase-like (PK-like) 646 936 IPR011009 -
Ssu3g1531 987 Pfam Malectin domain 397 582 IPR021720 -
Ssu3g1531 987 ProSitePatterns Serine/Threonine protein kinases active-site signature. 784 796 IPR008271 GO:0004672|GO:0006468
Ssu3g1531 987 Gene3D Ribonuclease Inhibitor 170 385 IPR032675 -
Ssu3g1531 987 Gene3D Transferase(Phosphotransferase) domain 1 740 948 - -
Ssu3g1531 987 SUPERFAMILY L domain-like 66 355 - -
Ssu3g1531 987 ProSiteProfiles Leucine-rich repeat profile. 285 307 IPR001611 GO:0005515
Ssu3g1531 987 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 75 962 - -
Ssu3g1531 987 Gene3D Ribonuclease Inhibitor 25 169 IPR032675 -
Ssu3g1531 987 Pfam Leucine rich repeat 261 320 IPR001611 GO:0005515
Ssu3g1531 987 Gene3D - 395 586 - -
Ssu3g1531 987 Gene3D Phosphorylase Kinase; domain 1 626 739 - -
Ssu3g1531 987 ProSiteProfiles Protein kinase domain profile. 664 952 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g1531 987 PANTHER BNAA08G00070D PROTEIN 75 962 - -
Ssu3g1531 987 CDD STKc_IRAK 670 936 - -
Ssu3g1531 987 MobiDBLite consensus disorder prediction 968 987 - -
Ssu3g1531 987 SMART serkin_6 664 936 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g1531 987 Pfam Protein tyrosine and serine/threonine kinase 667 936 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1531 Ssu-Chr3 40664753 40681233 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g1531 118 961 Receptor kinase-like Gene Family AT1G56120 60.545 0.0 1056
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Ssu3g1531 PK_Tyr_Ser-Thr 3.9e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1531 - - qsu:111995102 1309.28