Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1522 ATGATCCCTAATAAGTTTGTGGAGAAATATGGAGAAGGCTTACCAAATACTCTATTTCTTAAGCCTCCAAATGGTGCTGCAGAATGGAAATTGAGTTTGGAAAAACGCGATGGTAAAGTATGGTTTCAAAAGGGCTGGAAAGAATTCGCAGAGCATCACTCTCTAGTTCATGGGCATCTTTTGCTTTTTAGATACCAGAAAACTTCCCATTTCCAGGTACACATCTTTGATAGCAGTGCCTTAGAGATAGACTACCCTCTCGAAAAAGTAGATGGGAAAATGACCTCCAAAGATCCAGGAAATAAACCTCTAAATGGTGagaatatgaaatattatagaCCAGgtcaaaagagaaaagataactCGTCATTGGAATTCCTTCAACCACGTATGGGAAGTTACAAATGTGTTAAAGTTGATAATACCATGAAATTGCCAAAGGTTGCTCCGCATCATACTGACAGAAAGTGCAAAGGAAGACCAATGACTATTGCTAAGCAAGTTACGGCTTTTGATAGAGCAAGTTGTTTCAGACCCTGTAACCATCCTTCATGGTTGTCATCTATCCATCATACGTCCGTTCTCGAGGTCCCTTGGAGAAGTTACAATAGGGAACTCGACACTTTTCGCCATTATTTCCTTGTTAGGGCCAACTTTGTTTTGGCACTACTCTTGCATGAAAAGTTCACCGTTCAAGAGTACCTTGCTTTTTGA 714 0.3866 MIPNKFVEKYGEGLPNTLFLKPPNGAAEWKLSLEKRDGKVWFQKGWKEFAEHHSLVHGHLLLFRYQKTSHFQVHIFDSSALEIDYPLEKVDGKMTSKDPGNKPLNGENMKYYRPGQKRKDNSSLEFLQPRMGSYKCVKVDNTMKLPKVAPHHTDRKCKGRPMTIAKQVTAFDRASCFRPCNHPSWLSSIHHTSVLEVPWRSYNRELDTFRHYFLVRANFVLALLLHEKFTVQEYLAF 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1522 237 ProSiteProfiles B3 DNA-binding domain profile. 1 79 IPR003340 GO:0003677
Ssu3g1522 237 CDD B3_DNA 1 77 IPR003340 GO:0003677
Ssu3g1522 237 PANTHER B3 DOMAIN-CONTAINING 1 189 - -
Ssu3g1522 237 Pfam B3 DNA binding domain 1 78 IPR003340 GO:0003677
Ssu3g1522 237 Gene3D - 1 80 IPR015300 -
Ssu3g1522 237 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 1 189 - -
Ssu3g1522 237 SMART B3_2 1 79 IPR003340 GO:0003677
Ssu3g1522 237 SUPERFAMILY DNA-binding pseudobarrel domain 1 79 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1522 Ssu-Chr3 40092604 40097024 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g1522 2 91 B3 DNA Binding Superfamily AT1G49475 44.444 4.76e-19 80.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Ssu3g1522 B3 4.2e-13 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1522 - - gmx:100819782 241.891