Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1517 ATGGCTACTAAATATCCTCACCAACCTCAGCCTCAGGTGAAGCCAATCCACTTTTTCAAGATCATAACCGTTGTGAATCTTCAGGAAGAAAAGCTAATGATCCCAAAGAAGTTTGTGGAGAAATATGGAGAAGGCTTATCAACAAATACTCTATTTCTTAATACACCAAATGGTGTTGAATGGGGATTGAATTTGGAAAAATGTGATGGTGAACTATGGTTTCAAAAGGGTTGGAAAGAATTTGCAGAGTATCACTCTCTAGCTCATGGCCATCTTTTGGTTTTCAGATGCGAAAGAACTTCCCATTTTCAGGTACACATATTTGATTCAAGTGCCTTAGAGATAGACTACCCTTCCAAAAGAATAGAGTGTAAAATGGCCACCAATAATCAAGGAAATAAACctacaaataatgaaaatttggaGTACCACAGACCAGATCGAAAGAGAAAAGATTACTCCTCATTGGAATTTCTTCAACGATATCCATTGAGAAGTCGTAAGTGTGATACAGTTGAGAACAGCTTGATATTGCCAAAGGAGGCTCCACATCATACTGACAGAAAGTGCAAAGAAAAATCAAAGGCTACTGCTAACCATGTTACAGCTCTTGATAGAGCAAGTTCTTTCAAACCTTGTAATTCATTCTTCTTGGTTGTCATGCGTCCAGCATACATCCGTTCTAATGGTGGTCCTCTGGGAGATGAAACAGGAATTGAGACACCCAATATGGGAGGGGTGATTTcaatctaa 753 0.3785 MATKYPHQPQPQVKPIHFFKIITVVNLQEEKLMIPKKFVEKYGEGLSTNTLFLNTPNGVEWGLNLEKCDGELWFQKGWKEFAEYHSLAHGHLLVFRCERTSHFQVHIFDSSALEIDYPSKRIECKMATNNQGNKPTNNENLEYHRPDRKRKDYSSLEFLQRYPLRSRKCDTVENSLILPKEAPHHTDRKCKEKSKATANHVTALDRASSFKPCNSFFLVVMRPAYIRSNGGPLGDETGIETPNMGGVISI 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1517 250 Pfam B3 DNA binding domain 18 110 IPR003340 GO:0003677
Ssu3g1517 250 SUPERFAMILY DNA-binding pseudobarrel domain 12 111 IPR015300 -
Ssu3g1517 250 CDD B3_DNA 17 109 IPR003340 GO:0003677
Ssu3g1517 250 SMART B3_2 18 111 IPR003340 GO:0003677
Ssu3g1517 250 Gene3D - 12 112 IPR015300 -
Ssu3g1517 250 ProSiteProfiles B3 DNA-binding domain profile. 17 111 IPR003340 GO:0003677
Ssu3g1517 250 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 9 228 - -
Ssu3g1517 250 PANTHER B3 DOMAIN-CONTAINING 9 228 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1517 Ssu-Chr3 39956872 39971412 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g1517 18 226 B3 DNA Binding Superfamily AT3G18990 30.677 7.04e-25 99.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Ssu3g1517 B3 9.4e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1517 - - ccaj:109791706 351.673