Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1516 ATGGCTACTAAGTTTCATCACCAACCTCAGCCGAAGCCATTCCACTTTTTCAAGATCATAACCGCTCAAAATCTTCATGAAGGAAAGCTAATGATCCCAAATAAGTTTGTGGAGAAATATGGAGAAAGCTTACCAAATGATCTATTTCTTAAGACTCCAAATGGTGCTGAGTGGAAATTGAATTTGGAAAAACGTCCCGGTAAAATATGGTTTCAAGAGGGTTGGAAAGAATTTGCTGAGTATCACTCTCTAGCTCATGGGCATCTTTTGGTTTTCAGATGGGAAACAACTTCCCATTTTCAGGTACATGTCCTTGATTTGAGTGCCTTAGAGATAGACTACCCTTCCAAAAGAATAGAAGGTAAAACGGCCTCCAATAATCAAGGAAATAAACCTCCAAATGATGAAAATTTGGAATATTGCAAACCCGGTCATAAGAGAAAAGATAACTCCTTGTTGGAATGTCTTCAATGGTATCAATTGAGAAGTCGTAAGTGCGTAGAAGTTGAGAACACCTTGATTTTGCCAAGGGAGGCTCTGCATCATACTGACACAAAGTGCAAAGAAAAATCAAAGGTTATTGCTAACCAAGTTACAGCACTTGATAGAGCAAGTTCCTTCAAACCTTGTAATCCATTCTTCTTGGTTGTCATGCGTCCATCATATGTCCATTCTTCTACTGATAGCCGTCTGTATTTACCGGCTGAATTTTGTAGGAGACACTTTGATTTGCAAGAGAAGCAGAGACTGATCAACCTTCAGGTGTTAAATGGGAGAGTTTGGCCTGCAAAGTATCTAATCCTGAAAGTCAATGCAAAAACAAGATTCAAACTCTCAAGTGGATGGAAGGCATTTGTCAAGCACTATAACTTGAAAGTTGGTGATGTTTGCATCTTTGAGCTCATTCATAGAACTAAACTAACCTTCCTGGTTCACATCTTTAAAGAGACAGACAGTTCAAACTGTTCAACATCTCAAGTCAAATGA 987 0.388 MATKFHHQPQPKPFHFFKIITAQNLHEGKLMIPNKFVEKYGESLPNDLFLKTPNGAEWKLNLEKRPGKIWFQEGWKEFAEYHSLAHGHLLVFRWETTSHFQVHVLDLSALEIDYPSKRIEGKTASNNQGNKPPNDENLEYCKPGHKRKDNSLLECLQWYQLRSRKCVEVENTLILPREALHHTDTKCKEKSKVIANQVTALDRASSFKPCNPFFLVVMRPSYVHSSTDSRLYLPAEFCRRHFDLQEKQRLINLQVLNGRVWPAKYLILKVNAKTRFKLSSGWKAFVKHYNLKVGDVCIFELIHRTKLTFLVHIFKETDSSNCSTSQVK 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1516 328 CDD B3_DNA 212 315 IPR003340 GO:0003677
Ssu3g1516 328 Gene3D - 194 319 IPR015300 -
Ssu3g1516 328 ProSiteProfiles B3 DNA-binding domain profile. 216 317 IPR003340 GO:0003677
Ssu3g1516 328 SUPERFAMILY DNA-binding pseudobarrel domain 10 115 IPR015300 -
Ssu3g1516 328 ProSiteProfiles B3 DNA-binding domain profile. 15 108 IPR003340 GO:0003677
Ssu3g1516 328 SMART B3_2 16 108 IPR003340 GO:0003677
Ssu3g1516 328 SMART B3_2 214 317 IPR003340 GO:0003677
Ssu3g1516 328 PANTHER B3 DOMAIN-CONTAINING 10 315 - -
Ssu3g1516 328 Gene3D - 9 109 IPR015300 -
Ssu3g1516 328 CDD B3_DNA 14 106 IPR003340 GO:0003677
Ssu3g1516 328 Pfam B3 DNA binding domain 214 316 IPR003340 GO:0003677
Ssu3g1516 328 Pfam B3 DNA binding domain 16 105 IPR003340 GO:0003677
Ssu3g1516 328 SUPERFAMILY DNA-binding pseudobarrel domain 207 315 IPR015300 -
Ssu3g1516 328 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 10 315 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1516 Ssu-Chr3 39949095 39953286 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g1516 11 318 B3 DNA Binding Superfamily AT3G18990 30.571 8.38e-41 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Ssu3g1516 B3 4.5e-22 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1516 - - ccaj:109791708 491.5