Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1514 ATGGGTAGGGATCAGAAAAGCGTTGCCATGGTTAGgcaggaaaaaaagaagaagaagaataagaaaaatggGTCTATTGAGTCCATTTTCATGCATGCCGACGGCAAAGACTGGTTTCTTATGGTTTTAGGTACCTTGGGGGCAGTTGGTGAAGGCTTGGCCACCCCTCTAGTGTTGTATATCAGTAGCCGCATGATGAATAACATTGGGAATTCATCTAGCATGGAAGGAAACACTTTCATCCATAACATCAATAAGAATGCAGTGGCTTGGTTATATTTGGCTGGGGCCTCTTTCGCAGTTTGCTTCTTAGAGGGATATTGTTGGACAAGAACAAGTGAAAGACAAGCAGCAAGAATGAGATGCAGGTATCTGAAAGCAGTGCTTAGACAAGATGTTGCTTACTTTGATTTGCATGTCACAAGCACGTCAGAGATCATCACTAGTGTCTCCAGCGACAGCCTCGTAATTCAAGATGTTCTTAGTGAAAAGgtGCCAAATTTCTTGATGAACATTGCTTTGTTCGTTGGGAGCTACATAGCGGCGTTTGCAATGTTGTGGAGGCTGGCCATTGTGGGGTTTCCTTTCGTGGTTCTTCTCGTGATCCCGGGTTTAATTTACGGGAAGACTTTGATGGGATTGTCGAGCAAAATCAGAGAAGAGTATAACCAAGCTGGAACAGTGGCAGAACAAACAATTTCTTCAATCAGAACCGTTTATTCTTTTGTGGGGGAAAGTAAGACCATGACCGCTTTCTCTAACGCTCTTCAAGGGACGGTTGGGTTGGGCCTGAAACAAGGCTTGGCTAAAGGCCTAGCCATTGGAAGCAACGGCGTCGTTTTCGGTATTTGGTCTTTCATGTGCTATTACGGTAGCAGACTTGTCATTTATCATGGCGCTGAAGGAGGGACAGTCTTCGCTGTTGGAGCATCAATCGCTGTTGGTGGACTGGGATTAGGAGCGGGTTTATCGAATGTGAAGTACTTCTCAGAAGCAGGTTCGGCAGCGGAGGGTATAAGGGAAGTGATAAAGAGGGTTCCCAAGATTGATTCTGACAACAAGGATGGGGAAATTCTGGAGAGGGTTTACGGGGAAGTGGAATTTGACCATGTAGAGTTCGCATACCCTTCGAGGCCGGATACTGTTATTCTGAATGGCTTGTGCCTCAAGATTCCCGCGGGGACGAGAGTGGCGTTGGTGGGGGAGAGTGGGTCGGGGAAATCGACGGTGATAGCGCTTTTGCAGAGGTTTTATGACCCACTTGGGGGGGAGGTGCGTTTGGATGGGGTGGGTATTCAGAAGCTGCAGGTCAAGTGGCTGAGGTCGCAGATGGGGTTGGTGAGCCAGGAGCCTGCCCTGTTCGCGACCAGCATTAAAGAGAACATACTTTTCGGCAAAGAGGATGCCACGGAGGATGAGGTGGTTGAGGCTGCAAAAGCTTCCCATGCCCATAATTTCATTTCGCTTCTGCCTCACGGTTACCATACACAGGTGGGAGAGAGAGGGATTCAGATGTCAGGGGGACAAAAACAGAGGATAGCAATTGCGAGGGCAATAATTAAGAAACCGCGAATTCTCCTTCTGGACGAAGCAACAAGCGCGTTAGACTCAGAATCGGAGCGACTCGTCCAAGAAGCGTTGGACAATGCAGCTGCGGGTTGCACCGCCATTATCATTGCCCACCGTTTATCCACCGTCCGAAACGCAGACCTCATCGCCGTCGTTGGAGGCGGAAGGGTCATCGAGATGGGCTCGCACGACGAGCTCATCCAAAACGACAGTGGCGCCTACGCCTCCGCGTTTCGCCTCCAGCAACAAACGGACAAAGCAAAAGTAGAGCAGAGTGCGGAAACCGTTGCTCCCGGGAGTGTCCCTTGCACGACACCAACCACCGACACCGAAAACGCGGGCCCGGTGGGCCCAACGACACTCGGTGGCGATGACGTGGCGGAAGGGAAGAAGGTACGCGCGCCGTCGTTTCGGAGGCTGCTGACGCTGAGTGTCCCCGAGTGGAAGCACGTCGTTTTGGGGTGTGTGAACGCGATGGCTTTCGGTGCCGTTCAGCCCGTTTACGCATTCACGATGGGGTCCACGatacttttgtattttcacgCGGATCATGAGGAGATAGCGAGGAAGACTAGGATCTACTCGTTCAGCTTTCTGGGCCTCTTTGTGGTGTCCTTGTTTGCGAATATTGGGCAGCATTATTGCTTCGGTTACATGGGGGAGTACTTGACCAAACGGGTCAGAGAGACCGTGCTTTCCAAAATCCTCACTTTCGAAGTTGGGTGGTTTGATTTGGACGAAAACTCCAGTGGTGCCATCTGTTCCAGACTTGCCAAAGATGCTAATGTGGTGAGGTCTCTAGTGGGAGATAGAATGGCATTGCTGGTACAAACATTTTCAGCGGTAATAACAGCATACACGATGGGTCTTGTCATTTCCTGGAGGCTTTCCATTGTTATGATAGCCGTACAACCTATTATCATAGCATGCTTTTACACAAGGCGTGTGCTTCTCAAGAGCATGTCCAACAAGGCCGTGAAGGCCCAACAACAAAGCAGCAAGCTAGCTTCCGAAGCAGTTTCGAACCTTCGTACCGTTACGGCCTTTTCTTCTCAAGACCGGATTCTCAAAATGCTTGAAGcggcccaacaaggcccaagcCATGAGAACATTAGACAATCATGGTTTGCTGGCATTGGGCTTGGATGTTCCCAAGGCCTTGCATCCTGTATTTGGGCCCTTGACTTTTGGTATGGTGGCAAGCTTATCTCGTATGGCTACATAACAACAAAAACATTCTTCGAGAGCTTCATGGTTCTAGTGAGCACAGGAAGGATCATTGCTGATGCGGGAAGCATGACCACAGATCTTGCTAGAGGTGCCGATGTTGTGGGCTCGATTTTTGGTATCATAGATCGGTGTACAAAGATTGAGCCTGATGATCCAAATGGGTACAAGCCAAAGAAGTTAATTGGTGAAATAGAGCTTCATGATGTGCATTTTGCATACCCAACTAGGCCTAATGTGGCTATCTTCGAAGGTTTCTCTATTAAAATTGAGGCAGGGAAATCAACGGCATTGGTGGGGCAAAGTGGGTCTGGCAAATCAACCATCATAGGGTTAATAGAGAGATTTTATGATCCACTTAAAGGAATGGTGACAATAGATGGTATGGACATAAAATCATATAACCTAAAGTCACTAAGGAAGCACATAGCACTTGTGAGCCAAGAGCCAACGTTGTTTGGTGGGACCATAAAAGAGAACATTGCATATGGAACATGTGAGAAGGTTGATGAGGCCGAGATCATAGAGGCAGCACAAGCAGCGAACGCTCACGGTTTCATAGCTAGCTTAAGGGACGGGTACGAGACATGGTGTGGGGAAAAAGGAGTACAACTTTCAGGGGGTCAAAAGCAGAGAATAGCAATAGCCAGGGCCATATTGAAAAACCCGAAGGTGTTGCTATTGGACGAGGCCACAAGCGCATTAGATGGTCAATCAGAGAAGATGGTGCAAGATACGTTGATGAGGGTAATGATAGGGAGGACTAGTGTGGTGGTGGCACATAGGTTGAGCACCATACACAATTGTGATGTTATTGCTGTGTTAGAAAAGGGGAGGGTGGTGGAGATTGGAACCCACTCGTCCTTGTTGGCCAAAGGACCATGTGGAGCTTATTACTCTTTGGTGAGTCTTCAGATGAGACATGCAGCCACACCCAATAACGATTGTACTAAAGCTACCCATCCTATCAATTGA 3771 0.4771 MGRDQKSVAMVRQEKKKKKNKKNGSIESIFMHADGKDWFLMVLGTLGAVGEGLATPLVLYISSRMMNNIGNSSSMEGNTFIHNINKNAVAWLYLAGASFAVCFLEGYCWTRTSERQAARMRCRYLKAVLRQDVAYFDLHVTSTSEIITSVSSDSLVIQDVLSEKVPNFLMNIALFVGSYIAAFAMLWRLAIVGFPFVVLLVIPGLIYGKTLMGLSSKIREEYNQAGTVAEQTISSIRTVYSFVGESKTMTAFSNALQGTVGLGLKQGLAKGLAIGSNGVVFGIWSFMCYYGSRLVIYHGAEGGTVFAVGASIAVGGLGLGAGLSNVKYFSEAGSAAEGIREVIKRVPKIDSDNKDGEILERVYGEVEFDHVEFAYPSRPDTVILNGLCLKIPAGTRVALVGESGSGKSTVIALLQRFYDPLGGEVRLDGVGIQKLQVKWLRSQMGLVSQEPALFATSIKENILFGKEDATEDEVVEAAKASHAHNFISLLPHGYHTQVGERGIQMSGGQKQRIAIARAIIKKPRILLLDEATSALDSESERLVQEALDNAAAGCTAIIIAHRLSTVRNADLIAVVGGGRVIEMGSHDELIQNDSGAYASAFRLQQQTDKAKVEQSAETVAPGSVPCTTPTTDTENAGPVGPTTLGGDDVAEGKKVRAPSFRRLLTLSVPEWKHVVLGCVNAMAFGAVQPVYAFTMGSTILLYFHADHEEIARKTRIYSFSFLGLFVVSLFANIGQHYCFGYMGEYLTKRVRETVLSKILTFEVGWFDLDENSSGAICSRLAKDANVVRSLVGDRMALLVQTFSAVITAYTMGLVISWRLSIVMIAVQPIIIACFYTRRVLLKSMSNKAVKAQQQSSKLASEAVSNLRTVTAFSSQDRILKMLEAAQQGPSHENIRQSWFAGIGLGCSQGLASCIWALDFWYGGKLISYGYITTKTFFESFMVLVSTGRIIADAGSMTTDLARGADVVGSIFGIIDRCTKIEPDDPNGYKPKKLIGEIELHDVHFAYPTRPNVAIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGMVTIDGMDIKSYNLKSLRKHIALVSQEPTLFGGTIKENIAYGTCEKVDEAEIIEAAQAANAHGFIASLRDGYETWCGEKGVQLSGGQKQRIAIARAILKNPKVLLLDEATSALDGQSEKMVQDTLMRVMIGRTSVVVAHRLSTIHNCDVIAVLEKGRVVEIGTHSSLLAKGPCGAYYSLVSLQMRHAATPNNDCTKATHPIN 1256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1514 1256 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 997 1234 IPR003439 GO:0005524
Ssu3g1514 1256 CDD ABC_6TM_Pgp_ABCB1_D2_like 664 980 - -
Ssu3g1514 1256 PANTHER ABC TRANSPORTER B FAMILY PROTEIN 27 1244 - -
Ssu3g1514 1256 Pfam ABC transporter 384 533 IPR003439 GO:0005524
Ssu3g1514 1256 SUPERFAMILY ABC transporter transmembrane region 658 982 IPR036640 GO:0005524|GO:0016021
Ssu3g1514 1256 MobiDBLite consensus disorder prediction 1 23 - -
Ssu3g1514 1256 CDD ABC_MTABC3_MDL1_MDL2 366 604 - -
Ssu3g1514 1256 ProSitePatterns ABC transporters family signature. 1137 1151 IPR017871 GO:0005524
Ssu3g1514 1256 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 366 602 IPR003439 GO:0005524
Ssu3g1514 1256 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 356 604 IPR027417 -
Ssu3g1514 1256 MobiDBLite consensus disorder prediction 620 638 - -
Ssu3g1514 1256 Pfam ABC transporter 1017 1165 IPR003439 GO:0005524
Ssu3g1514 1256 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 27 1244 IPR039421 -
Ssu3g1514 1256 CDD ABC_MTABC3_MDL1_MDL2 997 1237 - -
Ssu3g1514 1256 MobiDBLite consensus disorder prediction 613 648 - -
Ssu3g1514 1256 ProSitePatterns ABC transporters family signature. 505 519 IPR017871 GO:0005524
Ssu3g1514 1256 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 986 1238 IPR027417 -
Ssu3g1514 1256 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 681 962 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Ssu3g1514 1256 SUPERFAMILY ABC transporter transmembrane region 30 350 IPR036640 GO:0005524|GO:0016021
Ssu3g1514 1256 SMART AAA_5 393 579 IPR003593 -
Ssu3g1514 1256 SMART AAA_5 1024 1219 IPR003593 -
Ssu3g1514 1256 Gene3D ABC transporter type 1, transmembrane domain 29 963 IPR036640 GO:0005524|GO:0016021
Ssu3g1514 1256 Gene3D - 987 1238 IPR027417 -
Ssu3g1514 1256 Gene3D - 356 605 IPR027417 -
Ssu3g1514 1256 Pfam ABC transporter transmembrane region 675 945 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Ssu3g1514 1256 Pfam ABC transporter transmembrane region 42 308 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Ssu3g1514 1256 Gene3D ABC transporter type 1, transmembrane domain 967 1242 IPR036640 GO:0005524|GO:0016021
Ssu3g1514 1256 CDD ABC_6TM_Pgp_ABCB1_D1_like 41 339 - -
Ssu3g1514 1256 Coils Coil 841 861 - -
Ssu3g1514 1256 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 42 308 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1514 Ssu-Chr3 39864430 39872505 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g1514 4 607 Calmodulin-binding Proteins AT2G36910 36.808 3.46e-108 369