Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1513 ATGGATTTTGTGGTAGTGGATTTGGACAAAGGAAATGAAGCAGAAAATAGCTGTCTAGAAGAGAGTACAAGTATATTTGAAGGAGTTGAAGTTCAAGAGCCATATGTGGGCATGGAGTTTGATTCTGAAGAAGCTGCTAGGAAATTTTATGTTGAATATGCCAGACGGGTTGGGTTTGTTGTACGCATAATGCAACGACGACGTTCTGGAATTGATGGGAGGACTCTTGCTCGCCGACTTGGATGTAACAAACAAGGATTCTCACCAAATAACAAGGTAACATTGGGACCAGAGAAAAAGCCAAGACCTAGCGCCCGAGAAGGTTGCAAGGCAACAATTTTGGTGAAGTTGGAAAAATCAGGTAAATGGGTCGTCACAAGATTTATAAAGGATCACAATCATCCTCTAATTGCTACAGCTAATGGGTTCAGCACAGCGGGtgataaagataagaaaattgCAGAACTTACCATGGAGTTAGAGCGCCAAGATCAACTGTGTGCTGCATATCGAGAAAAACTGCTCAGCTTCATAAGCAATGTTGAGGAGGAAACAGAGGAACTGTCCATAAAAACTCAACacattattgaaaatataaggAGAGCTGAGtcagaaatgaaaaaatgttcCCAGAACAGAAAGCCTTGGTGCTTAACATGA 660 0.3909 MDFVVVDLDKGNEAENSCLEESTSIFEGVEVQEPYVGMEFDSEEAARKFYVEYARRVGFVVRIMQRRRSGIDGRTLARRLGCNKQGFSPNNKVTLGPEKKPRPSAREGCKATILVKLEKSGKWVVTRFIKDHNHPLIATANGFSTAGDKDKKIAELTMELERQDQLCAAYREKLLSFISNVEEETEELSIKTQHIIENIRRAESEMKKCSQNRKPWCLT 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1513 219 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 4 212 - -
Ssu3g1513 219 PANTHER PROTEIN FAR1-RELATED SEQUENCE 5-LIKE 4 212 - -
Ssu3g1513 219 Coils Coil 153 173 - -
Ssu3g1513 219 Pfam FAR1 DNA-binding domain 48 137 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1513 Ssu-Chr3 39841638 39844732 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Ssu3g1513 FAR1 5e-29 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1513 - - vun:114183030 400.593