Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1500 ATGAGGAGTAGGGGCGAGCGTAATAGGAGGCAGATCGACGGTGACGGGCTAAGTGGGAGGGAGGTCGACGGCTTTGAGGAGACTTTGAGAAGAAGACAGTTCAGAGGGGGACAGACTTTGAGAAGGAGAGAGTTCGACGCGGCGGTTGCAGAAGATTGCAAGATGAAGtTCAACATTGCGAATCCGACCACTGGATGCCAGAAGAAGCTCGAGATCGACGACGATCAGAAACTACGAGCATTTTGGGACAAGAGGATCTCACAGGAGGTCAGTGGAGATGCACTTGGTGAGGAATTTAAAGGCTATGTCTTCAAAATTACTGGAGGTTGTGACAAACAAGGATTCCCAATGAAGCAGGGAGTGCTCACCCCTGGTCGTGTTCGACTCTTGCTTCACAGGGGAACTCCTTGTTTCCGTGGATATGGAAGGCGTAATGGAGAGCGTAGGAGAAAGTCTGTTCGTGGGTGCATTGTCAGCCCAGACCTCTCTGTTCTGAACTTGGTAATTGTGAAGAAGGGTGAGAATGATTTACCAGGATTGACCGACATTGAGAAGCCAAGGATGAGAGGTCCGAAGAGAGCATCCAAAATCCGTAAACTGTTCAACCTGTCTAAGGAGGATGATGTTAGGAAGTATGTCAACACCTACCGTCGGACATTTACAACAAAATCTGGGAAAAAGGTGAGCAAAGCTCCGAAGATACAAAGATTGGTCACTCCTCTTACTCTCCAAAGAAAGCGGGCAAGGATTGCTGATAAGAAGAAGAGAATTGCCAAGGCAAAATCAGAAGCAGCTGAGTACCAGAAACTCCTTGCCTCCAGGATGAAGGAGCAGAGGGAGCGCCGCAGTGAGAGTTTAGCTAAGAGGAGATCCAAGCTTTCCAGTGCTACCAAGGCAGCTGCGATTGTATAG 912 0.489 MRSRGERNRRQIDGDGLSGREVDGFEETLRRRQFRGGQTLRRREFDAAVAEDCKMKFNIANPTTGCQKKLEIDDDQKLRAFWDKRISQEVSGDALGEEFKGYVFKITGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGYGRRNGERRRKSVRGCIVSPDLSVLNLVIVKKGENDLPGLTDIEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKSGKKVSKAPKIQRLVTPLTLQRKRARIADKKKRIAKAKSEAAEYQKLLASRMKEQRERRSESLAKRRSKLSSATKAAAIV 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1500 303 PANTHER 40S RIBOSOMAL PROTEIN S6 55 300 IPR001377 GO:0003735|GO:0005840|GO:0006412
Ssu3g1500 303 SMART Ribosomal_S6e_2 55 182 IPR001377 GO:0003735|GO:0005840|GO:0006412
Ssu3g1500 303 PANTHER 40S RIBOSOMAL PROTEIN S6 55 300 - -
Ssu3g1500 303 Hamap 30S ribosomal protein S6e [rps6e]. 7 171 IPR020924 GO:0003735|GO:0005840|GO:0006412
Ssu3g1500 303 ProSitePatterns Ribosomal protein S6e signature. 106 117 IPR018282 GO:0003735|GO:0005840|GO:0006412
Ssu3g1500 303 MobiDBLite consensus disorder prediction 273 303 - -
Ssu3g1500 303 Pfam Ribosomal protein S6e 55 182 IPR001377 GO:0003735|GO:0005840|GO:0006412
Ssu3g1500 303 Gene3D - 187 288 - -
Ssu3g1500 303 MobiDBLite consensus disorder prediction 273 291 - -
Ssu3g1500 303 Coils Coil 243 277 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1500 Ssu-Chr3 39387912 39400393 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g1500 55 296 Cytoplasmic Ribosomal Protein Gene Family AT5G10360 73.140 5.46e-119 338
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1500 K02991 - gmx:100804076 439.884