Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1486 ATGGCTGTTCCTTTGCTAAGCaagaaaattgtgaaaaagCGTGTCAAGAAGTTCAAGAGGCCTCAAAGTGACCGGAAAATTTCTGTCAAGTCCAACTGGCGAAGGCCGAAGGGTATTGATTCACGTGTAAGGAGAAAGTTCAAAGGATGTACTTTGATGCCAAACATTGGTTATGGTTCAGACAAGAAGACCCGCCACTATCTGCCTAATGGATTTAAGAAGTTTGTTGTCCACAATGTCAAGGATCTGGAACTTCTGATGATGCACAACAGGACATACTGTGCTGAGATAGCACACAATGTGTCTACCAGGAAAAGAAAGGAGATTGTAGAGCGTGCCGCACAGTTGGATGTTGTTGTTACCAACAAACTGGCCAGGTTGCGCAGCCAAGAAGACGAGTGA 402 0.4353 MAVPLLSKKIVKKRVKKFKRPQSDRKISVKSNWRRPKGIDSRVRRKFKGCTLMPNIGYGSDKKTRHYLPNGFKKFVVHNVKDLELLMMHNRTYCAEIAHNVSTRKRKEIVERAAQLDVVVTNKLARLRSQEDE 133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1486 133 CDD Ribosomal_L32_L32e 22 122 IPR001515 GO:0003735|GO:0005840|GO:0006412
Ssu3g1486 133 PANTHER 60S RIBOSOMAL PROTEIN L32-1 1 133 - -
Ssu3g1486 133 Pfam Ribosomal protein L32 16 122 IPR001515 GO:0003735|GO:0005840|GO:0006412
Ssu3g1486 133 PANTHER 60S RIBOSOMAL PROTEIN L32 AND DNA-DIRECTED RNA POLYMERASE II, SUBUNIT N 1 133 IPR001515 GO:0003735|GO:0005840|GO:0006412
Ssu3g1486 133 SUPERFAMILY Ribosomal protein L32e 2 131 IPR036351 -
Ssu3g1486 133 SMART Ribosomal_L32e_2 15 122 IPR001515 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1486 Ssu-Chr3 38867495 38868871 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g1486 1 133 Cytoplasmic Ribosomal Protein Gene Family AT4G18100 86.466 4.76e-86 245
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1486 K02912 - jre:109000710 253.832