LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ssu3g1485	ATGCACGGCGGCGACAGCGGAGAGCTCCGGCGCGGCGACACCTTGGACTTCCGGAACCTGAAGGTGGTCTCCGCCGTGGGGCGCGGCGCCAAGGGCGTGGTGTTCCTCGCGAGGCCGTACGGCGCGGCGAGCGGGGAGTGGCTGGCGCTGAAGGTGGTGTCGAAGGCGCTGCTGCGGAAGAAGAACAGGGGCGACGGCGGGTGCCGGAGGGTGTCGTTCGAGAGGCACATACTGCGCCGTTTCGATCACCCGCTGCTGCCGCGGTTCCGAGGGGCCTTCGAGACGGAGCAACTCGTTGGGTTCGCCATCGATTACTGCCACGGTGGAAATCTGCATTCGCTTAGGAAGAAGCAATCGGAGAAGACCTTCTCCGAAGAAACCATAAGGTTTTACGCAGTGGAATTGGTCCTAGCATTGGAGTATTTGCACAACTTCGGAGTAGTGTATAGGGATTTGAAGCCGGAGAATGTCATGGTCCAAGAAACTGGTCACATAATGCTCGTGGATTTTGACCTCTCCAAGAAGCTGAACCCGAAGTCAAACTCGTCGAGTTGCAACTCGTCACCGTGTTCTGACTCGTCGTCAGAGAAAGACCAAAGAAAGCGACGATTCTCGAGGTTCAACTGTTACTGTCACTCATCGCAACCGCTTTATGACTTAGAAATTCCGAGTCAGCTCGACACAATCCTGGCACGTCGGAGCGAGTCGGACTCGGTGGAAAAGTCCAACTCATTTGTGGGAACTGAGGATTACGTGGCACCCGAGGTTATATCAGGTAAAGGACACGACTTTGGAGTTGATTGGTGGTCGTTGGGCATCGTTTTGTACGAGATGCTCTACGGGACGACGCCATTTAAGGGTGCGAATAGGAAAGAAACGTTTCACCAGATTTTGACTAGGGAACTCAATTTGACTGGTGAAATGACACAGTTGAGGGACTTGATTAAGAAGTTGCTTGAGAAAGATCCTAACCGTAGGATCGAGGTGGATGAGATCAAGGGCCACAATTTCTTTAAGGGTGTGAAGTGGGACACGGTGTTGCAAATTGCACGTCCACCGTATATTCCTCAAAATGAGATTGAGGATTCAGTAGGGTTTTCGAGAAAAGATGTAGAGTCATTTGTTCACGGGATATTTTTTCCAAAGAATAAAGGTGAGGGAGATAAAACTAGTGAAGGGGAGCAAAAGAGGAATGAAAAGCAAAAAGAGGACGATAATAATAACCACAATAATAAGAATGTGTGGGTTGACAAGTTAAATCAAAATTCCACtaagaatgaaatttttttaattttttga	1299	0.4958	MHGGDSGELRRGDTLDFRNLKVVSAVGRGAKGVVFLARPYGAASGEWLALKVVSKALLRKKNRGDGGCRRVSFERHILRRFDHPLLPRFRGAFETEQLVGFAIDYCHGGNLHSLRKKQSEKTFSEETIRFYAVELVLALEYLHNFGVVYRDLKPENVMVQETGHIMLVDFDLSKKLNPKSNSSSCNSSPCSDSSSEKDQRKRRFSRFNCYCHSSQPLYDLEIPSQLDTILARRSESDSVEKSNSFVGTEDYVAPEVISGKGHDFGVDWWSLGIVLYEMLYGTTPFKGANRKETFHQILTRELNLTGEMTQLRDLIKKLLEKDPNRRIEVDEIKGHNFFKGVKWDTVLQIARPPYIPQNEIEDSVGFSRKDVESFVHGIFFPKNKGEGDKTSEGEQKRNEKQKEDDNNNHNNKNVWVDKLNQNSTKNEIFLIF	432

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ssu3g1485	432	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	147	159	IPR008271	GO:0004672\|GO:0006468
	Ssu3g1485	432	SUPERFAMILY	Protein kinase-like (PK-like)	19	364	IPR011009	-
	Ssu3g1485	432	PANTHER	SERINE/THREONINE-KINASE OXI1-LIKE PROTEIN	4	405	-	-
	Ssu3g1485	432	SMART	serkin_6	20	338	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Ssu3g1485	432	ProSiteProfiles	AGC-kinase C-terminal domain profile.	339	432	IPR000961	GO:0004674\|GO:0005524\|GO:0006468
	Ssu3g1485	432	Pfam	Protein kinase domain	239	338	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Ssu3g1485	432	Pfam	Protein kinase domain	22	185	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Ssu3g1485	432	MobiDBLite	consensus disorder prediction	382	411	-	-
	Ssu3g1485	432	PANTHER	FLIPPASE KINASE 1-RELATED	4	405	-	-
	Ssu3g1485	432	Gene3D	Transferase(Phosphotransferase) domain 1	229	357	-	-
	Ssu3g1485	432	Gene3D	Transferase(Phosphotransferase) domain 1	110	184	-	-
	Ssu3g1485	432	ProSiteProfiles	Protein kinase domain profile.	20	338	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Ssu3g1485	432	MobiDBLite	consensus disorder prediction	380	414	-	-
	Ssu3g1485	432	Gene3D	Phosphorylase Kinase; domain 1	20	109	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ssu3g1485	Ssu-Chr3	38862909	38865806	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ssu3g1485	7	432	AGC Kinase Gene Family	AT3G25250	51.835	5.38e-144	415

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	AGC_RSK-2	Ssu3g1485		Pkinase	1.3e-32	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ssu3g1485	K20714		-	gmx:100813693	668.692