Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1482 atgagtccAAACGTAGATTATTCAGTGTTAGTGGCAAAACAAGCGGAACAACTAAGAATAGACGGCAACAACTGCTTCAAGAAAGATCGTTTTGGAGCTGCCATCGATGCTTACACTGAGGCAATTACGCTGTGTCCCGATGTTCCGGTGTATTGGACCAATCGTGCTCTTTGCCATCTAAAGCGCAATGACTGGACCAAAGTAGAGGAAGACTCTCATCAAGCTATTAAGCTTGACAACAATTCGGTAAAGGCCCACTATATGTTAGGTCTTGCATTGGCACAGCGACAAGAATTTGCTAAAGGAATCTTAGAATTGGAGAAGGCTTTGGATCTTGATAGAGGTGCCCATCCTAAAGGCCAAATGGTAGAGGAGATATGGCAAGAGCTTGCAAAAGCAAAATACTTGGAGTGGGAACATTCACATACTAAGCAATCATGGGAACTGCAAAGCTTGAAAGAAGCTTGTGAGTCCGctttaaaggaaaaacatttTCTGGAAGTCCTCCACATGGAAGAATTTATAGAAGATGCTACTATTTCCCATTTAGAACAATTAGAGGCTTTAGAAAGTGTGTTTAATAAAGTTGCTGAGGATGACATGCCTACTGAGGTGCCGGATTATCTATGCTGTAGAATCACACTTGATATCTTTTGTGATCCTGTCATTACCCCAAGTGGACTTACATATGAGAGGGCAGTGATTCTCGACCATCTTGAGAAGGTCGGTAAGTTTGATCCAGTCACTCGGGATCCTCTTGATCCATCACAGCTAATACCCAACTTAGCCATAAAGGAAGCAGTTCAGGAATTTTTGGACAAACATGGGTGGGCATACAAAGATATATTAGCAAAAGATTAA 861 0.4088 MSPNVDYSVLVAKQAEQLRIDGNNCFKKDRFGAAIDAYTEAITLCPDVPVYWTNRALCHLKRNDWTKVEEDSHQAIKLDNNSVKAHYMLGLALAQRQEFAKGILELEKALDLDRGAHPKGQMVEEIWQELAKAKYLEWEHSHTKQSWELQSLKEACESALKEKHFLEVLHMEEFIEDATISHLEQLEALESVFNKVAEDDMPTEVPDYLCCRITLDIFCDPVITPSGLTYERAVILDHLEKVGKFDPVTRDPLDPSQLIPNLAIKEAVQEFLDKHGWAYKDILAKD 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1482 286 Pfam U-box domain 205 277 IPR003613 GO:0004842|GO:0016567
Ssu3g1482 286 SUPERFAMILY RING/U-box 198 281 - -
Ssu3g1482 286 Gene3D Tetratricopeptide repeat domain 11 172 IPR011990 GO:0005515
Ssu3g1482 286 PANTHER CARBOXYL TERMINUS OF HSC70-INTERACTING PROTEIN-RELATED 11 281 - -
Ssu3g1482 286 PANTHER E3 UBIQUITIN-PROTEIN LIGASE CHIP 11 281 IPR045200 GO:0000209|GO:0061630
Ssu3g1482 286 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 203 281 IPR013083 -
Ssu3g1482 286 ProSiteProfiles U-box domain profile. 204 278 IPR003613 GO:0004842|GO:0016567
Ssu3g1482 286 SUPERFAMILY TPR-like 13 133 IPR011990 GO:0005515
Ssu3g1482 286 CDD RING-Ubox_CHIP 205 271 IPR045202 -
Ssu3g1482 286 SMART Ubox_2 208 271 IPR003613 GO:0004842|GO:0016567
Ssu3g1482 286 Coils Coil 149 169 - -
Ssu3g1482 286 SMART tpr_5 83 116 IPR019734 GO:0005515
Ssu3g1482 286 SMART tpr_5 15 48 IPR019734 GO:0005515
Ssu3g1482 286 SMART tpr_5 49 82 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1482 Ssu-Chr3 38794830 38800902 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g1482 10 280 U-box Gene Family AT3G07370 65.683 9.08e-137 385
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1482 K09561 - gmx:100796519 458.373
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g1482 3 38794830 38800902 Ssu2g0641 2 36367443 36374163 PCT