Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1481 ATGGCCAAGCCAGGGGTGTTGGACTCTGATCCAGGGGTGATGGTGAAGAAGACCATAGAGTTGAAGAGGGAGCTGCAGAGGTTGGTGGAGTCCATTTTGGATGATGAGGATATCAGCACTGAGACCATTGATCAAGCAAAAGAGACTCTGTGTGTTCTCAAGGAGTTGAAGCTCAGAAAGAGGTCTTCACTGTCTTGGAAGCTGCACAACAAGAGTGTGACCTCTTGCCCTGATGAATTCAAGTGTCCTCTTTCCAAGGAATTGATGAGAGATCCTGTCATTGTGGCTTCTGGTCAGACATATGATAGACCTTTCATTCAAAAATGGCTAATTGCTGGAAATAGGACTTGCCCTCGAACCCATCAAGTCCTTTCTCACACTGTGCTTACTCCAAATCACTTGATAAGGGAAATGATAGAACAATGGTCTAAAAACCAAGGGATTGAATTGTCAAATACTGTTCAATATATTGATGAGGAAGGTTTAAATGAAGCCGACCGCGAGCATTTTCTTTGTTTGCTTAGGAAAATGTCTTCCACACTTTCTGATCAGAAGACAGCCGCAAAAGAACTGCGCTTGTTGACAAAGAAGTATCCTTGTTTCCGGGTACTTTTTTGTGATTCTGCAGATGCCATTCCCCAATTGCTTAAGCCAATTTGTGGGAGTGATTCTTTTAGTAGTATTCACCCTGATCTCCAAGAAGATGTAATCACAACGCTCCTCAACATCTCTATTCATGATAACAACAAAAAGCTAGTGGCTGAAACTCCTATGGTAATTCCTCTCCTCATGAGAGCATTGAGATCTGGAACAATTGAAACAAGAAGCAATGCTGCAGCTGCCCTTTTCACCTTGTCAGCTCTTGACTCAAACAAGGAACTCATAGGGAAATCTGGTGCCTTAAAGCCATTAATTGACCTCTTGGAAGAAGGGCATCCCTTAGCCATGAAGGATGTTGCTTCAGCAATTTTTAACATATGTGTAATGCATGAGAACAAGGCAAGAGCTGTGAAGGACGGCGCACTGAGGGTGATTTTGACAAAGATAAAGAATCAGGTTCATGTTGATGAACTATTGGCTATCCTTGCACTGCTTTCAAGTCACCAGAAAGCTGTTCATGACATGGGAGATCTTGGAGCTGTTCCTAGCTTGCTAAGAATTATCAGAGAGAGCTCGTGCGAACGCAACAAGGAGAATTGTGTAGCAATCCTTCAAACTATTTGTCTGTATGATAGATCGAAGTTGAAGGAAATAAGGGAAGAGGAGAACAGCCACAAAACAATCTCTGAGCTAGCACAGAATGGAACATCAAGGGCTAAGAGGAAAGCTAGTGGAATTCTTGAGAGACTGAACAGGGTTGTTAATATCACACACACTGCATAA 1383 0.4273 MAKPGVLDSDPGVMVKKTIELKRELQRLVESILDDEDISTETIDQAKETLCVLKELKLRKRSSLSWKLHNKSVTSCPDEFKCPLSKELMRDPVIVASGQTYDRPFIQKWLIAGNRTCPRTHQVLSHTVLTPNHLIREMIEQWSKNQGIELSNTVQYIDEEGLNEADREHFLCLLRKMSSTLSDQKTAAKELRLLTKKYPCFRVLFCDSADAIPQLLKPICGSDSFSSIHPDLQEDVITTLLNISIHDNNKKLVAETPMVIPLLMRALRSGTIETRSNAAAALFTLSALDSNKELIGKSGALKPLIDLLEEGHPLAMKDVASAIFNICVMHENKARAVKDGALRVILTKIKNQVHVDELLAILALLSSHQKAVHDMGDLGAVPSLLRIIRESSCERNKENCVAILQTICLYDRSKLKEIREEENSHKTISELAQNGTSRAKRKASGILERLNRVVNITHTA 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1481 460 Pfam Armadillo/beta-catenin-like repeat 290 327 IPR000225 GO:0005515
Ssu3g1481 460 SUPERFAMILY ARM repeat 170 450 IPR016024 -
Ssu3g1481 460 Pfam U-box domain 77 146 IPR003613 GO:0004842|GO:0016567
Ssu3g1481 460 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 73 149 IPR013083 -
Ssu3g1481 460 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 9 5 458 - -
Ssu3g1481 460 SMART arm_5 196 245 IPR000225 GO:0005515
Ssu3g1481 460 SMART arm_5 288 328 IPR000225 GO:0005515
Ssu3g1481 460 SMART arm_5 368 409 IPR000225 GO:0005515
Ssu3g1481 460 SMART arm_5 246 287 IPR000225 GO:0005515
Ssu3g1481 460 CDD RING-Ubox_PUB 80 122 IPR045210 -
Ssu3g1481 460 SMART Ubox_2 79 142 IPR003613 GO:0004842|GO:0016567
Ssu3g1481 460 ProSiteProfiles U-box domain profile. 75 149 IPR003613 GO:0004842|GO:0016567
Ssu3g1481 460 PANTHER U BOX DOMAIN-CONTAINING 5 458 - -
Ssu3g1481 460 Gene3D - 356 454 IPR011989 -
Ssu3g1481 460 Gene3D - 206 354 IPR011989 -
Ssu3g1481 460 SUPERFAMILY RING/U-box 72 150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1481 Ssu-Chr3 38766116 38768919 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g1481 138 460 U-box Gene Family AT3G07360 60.843 5.22e-131 380
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1481 - - gmx:100809408 835.869