Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1478 ATGCAAAGGTTTTGCGGTTGCGACGCTGTCACAAATTTCAAGCCTCTTGTCGAAGTCGGTGACGATGCCGAATCTGAGTTCCTTAACTCGCATTCCAAGTCTGAGATCATCAACATGCTCCGCAAGCACCCCTACGATGACGAGCTTCAGCAAAGCATGCGCGACGGGAGGCACCATCCCGCCTACAAGACAAACACATTCACTACAAGCAGCACGTGTGACACGAAGGCGCATGAGCAGTTGTTCGAGAAAATGGTTATGCCAAGCGATGTCGGGAAGTTGAATCAGCTAGTGATACCAAAGCAGCACGCGAAGAAGCACTAA 324 0.5062 MQRFCGCDAVTNFKPLVEVGDDAESEFLNSHSKSEIINMLRKHPYDDELQQSMRDGRHHPAYKTNTFTTSSTCDTKAHEQLFEKMVMPSDVGKLNQLVIPKQHAKKH 107
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1478 107 SUPERFAMILY DNA-binding pseudobarrel domain 81 107 IPR015300 -
Ssu3g1478 107 PANTHER AP2/ERF AND B3 DOMAIN TRANSCRIPTION FACTOR 2 107 - -
Ssu3g1478 107 Gene3D - 70 107 IPR015300 -
Ssu3g1478 107 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 2 107 IPR044800 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1478 Ssu-Chr3 38695039 38695362 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g1478 1 107 B3 DNA Binding Superfamily AT1G25560 56.250 6.10e-32 113
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1478 K09287 - gmx:732601 130.568