Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1475 ATGGAAAACCAATTCTTTCTCGATGCTGGTGTGCCCCCTCAGCTGCATTTTGAACCTTCACCACATCCTTGTCCACCCTCTTGGCAATCACTGTCTTCTGCCATGGATGTTCAAGTGACAGTTTTGAATTGTTCCACTGAGCAGACCCGGGATTGCTTTTACACACCAACATGGGACAAGTCAACGGATCATGGTCTTCATTTTGATTCTGCACTGAGTTCAATGGTGTCTTCCCCTGCAGCTTCCAATTCCAACATGTCAAGTGAGAATTTTGTCATCAGGGAATTGATTGGAAAATTGGGGAacattggtggtggtggtggctctGATGAGATCTCACCTCATTCTCAGCCTTTGGTTGGTGCATCTTCCTACATCAATGGCAATAACAGCACCAACACTTCATGTTACAGCACCCCTTTGAGTTCTCCTCCGAAGGTGAACATGAACAAGATCCCCAGAGTGGTGAACCACTTGGTGAAAGAGGGCATGCCCCCCAGTTTGGGGACATCAATGTCCTTGAATTCCAGTGTGGCAGAATTCTCAGCTGATCCTGGCTTTGCTGAGAGGGCTGCAAAGTTTTCTTGCTTTGGAAGTAGGAGTTTCAATGGCAGGACCACCCAATTGGGCCTCAACAATGCTGAATTGACTCAGAGATCTTCTCCATTGGTGGAAAATGGGAAGCTCCCGAGAGTCTCAAGTAGTCCATCACTCGAAGTGCTTGGATCTCAAATGGGCACCCAGGAGAACAAGAATTCTCCATTGCAAGACCTGATGGAAGTGGCCAATTCTCAAGAGGAATCTACTATCTCTGAACAAGCTCCAAATGGGGAAACTGGGGTCAAACCTTCCCCTTATGTGAATTCTAGGAAAAGAAAAGGTCCATCCAAAGGAAAAGCCAAAGAAACTTCAACCTCTACCAACCCCCTTATGGCTGTTGAAGCTAGTGAAGACTCAAATACAAAGCGCAGCAAGCCTAATGAAGGTGAGGGGAATGAAAGTGACCAATTAAAGGCAGAGGAAGAGGCCAAAGGGGGTAGTAGTAATGCAGGTGATGAGAAACAGAACAAGAGTAACTCAAAACCTCCTGAGCCTCCAAAGGATTACATTCATGTTAGAGCAAGAAGAGGTCAAGCCACTGATAGTCATAGTCTTGCAGAAAGAGTTCGGAGGGAGAAAATCAGTGAAAGAATGAAGCTTCTCCAAGATCTTGTACCAGGTTGCAATAAGGTCACGGGTAAAGCACTGATGCttgatgaaattataaattatgttcagtCATTGCAGCGTCAAGTTGAGTTTCTGTCTATGAAGTTGGCTTCTGTTAACACCAGGCTGGATTTTAGTATTGAGAGTCTAATCTCAAAAGATatatttcaatcaaataattctTTGGCAAACCCAATATTCCCATTAGATTCCTCAGCCCCAGCCTTTTATGGGCAACACCCTCAGCCAAACCCAGCAATCCACAATAACATTCCTAATGGAACTTTGACCCACAGCTCAGTGGACCCATTAGATACTGGTCTATGCCAAAGCGTTGGCATGCATTTACCTCGCCTAAATGGGTTTAATGAAGGTGGCTCTCAGTATCCAATAACATTCTCTGAAGATGACCTCCACACCATTGTTCAGATGGGATTTGGCCAAACTGCAAATAGGAAAATACCAAGGCGATCTCAGAGTTTCAACGGCTCAAATCAAGTACCCCTATGA 1719 0.4363 MENQFFLDAGVPPQLHFEPSPHPCPPSWQSLSSAMDVQVTVLNCSTEQTRDCFYTPTWDKSTDHGLHFDSALSSMVSSPAASNSNMSSENFVIRELIGKLGNIGGGGGSDEISPHSQPLVGASSYINGNNSTNTSCYSTPLSSPPKVNMNKIPRVVNHLVKEGMPPSLGTSMSLNSSVAEFSADPGFAERAAKFSCFGSRSFNGRTTQLGLNNAELTQRSSPLVENGKLPRVSSSPSLEVLGSQMGTQENKNSPLQDLMEVANSQEESTISEQAPNGETGVKPSPYVNSRKRKGPSKGKAKETSTSTNPLMAVEASEDSNTKRSKPNEGEGNESDQLKAEEEAKGGSSNAGDEKQNKSNSKPPEPPKDYIHVRARRGQATDSHSLAERVRREKISERMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQRQVEFLSMKLASVNTRLDFSIESLISKDIFQSNNSLANPIFPLDSSAPAFYGQHPQPNPAIHNNIPNGTLTHSSVDPLDTGLCQSVGMHLPRLNGFNEGGSQYPITFSEDDLHTIVQMGFGQTANRKIPRRSQSFNGSNQVPL 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1475 572 MobiDBLite consensus disorder prediction 300 317 - -
Ssu3g1475 572 CDD bHLH_AtBPE_like 368 453 - -
Ssu3g1475 572 Coils Coil 425 445 - -
Ssu3g1475 572 MobiDBLite consensus disorder prediction 318 348 - -
Ssu3g1475 572 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 2 569 IPR024097 GO:0006355
Ssu3g1475 572 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 378 428 IPR011598 GO:0046983
Ssu3g1475 572 SMART finulus 384 434 IPR011598 GO:0046983
Ssu3g1475 572 MobiDBLite consensus disorder prediction 261 369 - -
Ssu3g1475 572 MobiDBLite consensus disorder prediction 261 278 - -
Ssu3g1475 572 Pfam Helix-loop-helix DNA-binding domain 382 429 IPR011598 GO:0046983
Ssu3g1475 572 Gene3D - 375 450 IPR036638 GO:0046983
Ssu3g1475 572 MobiDBLite consensus disorder prediction 552 572 - -
Ssu3g1475 572 PANTHER BHLH TRANSCRIPTION FACTOR 2 569 - -
Ssu3g1475 572 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 376 447 IPR036638 GO:0046983
Ssu3g1475 572 MobiDBLite consensus disorder prediction 217 236 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1475 Ssu-Chr3 38537201 38539576 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g1475 1 538 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G07340 43.613 3.71e-111 337
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Ssu3g1475 HLH 4.6e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1475 - - gmx:100787699 961.829
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g1475 3 38537201 38539576 Ssu2g0611 2 35078737 35081454 PCT