Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1473 atgtgtttgtGGGATTTTTTCCCTGATGGGTTCTGTTATTGTTTTTCAACAGGTATTTCTAGGGATTCTATGCACAAGAGGCGTGCCACTGGTGGCAAGAAGAAGGCatggagaaagaagagaaaGTATGAGCTTGGTCGCCAGCCTGCAAACACTAAGTTATCAAGCAACAAGACAGTAAGGAGGATTCGTGTTAGAGGTGGCAATGTGAAATGGAGGGCTTTGAGGTTGGATACCGGTAATTACTCATGGGGTAGTGAAGCAGTAACTCGCAAGACTCGTATTCTGGATGTTGTTTACAATGCCTCAAACAATGAGCTTGTGCGAACTCAGACCCTGGTCAAGAGTGCTATTGTTCAAGTTGATGCTGCTCCTTTCAAGCAGTGGTACCTTCAACACTATGGTGTTGATAttgggagaaaaaagaaagtagcATCCAAGAAGGACACCACTGAGGTGATACAATTGGAGAAGCTGCTTGCTGAAGAAACTAAGAAAAGTAACCACGTGCAGAGAAAACTTGAGAAGCGCCAGAAAGAGCGTAAACTCGATCCCCACATTGAAGAGCAATTTGGTGGTGGCCGATTGTTGGCCTGTATTTCTTCTCGCCCTGGACAATGTGGCAGGGCTGATGGCTACATTTTGGAAGGTAAGGAGCTGGAATTTTACATGAAGAAACTCCAAAGGAAGAAGGGAAAGGGTGCTGCGTAA 711 0.4262 MCLWDFFPDGFCYCFSTGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRKKKVASKKDTTEVIQLEKLLAEETKKSNHVQRKLEKRQKERKLDPHIEEQFGGGRLLACISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGAA 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1473 236 CDD Ribosomal_S8e_like 21 215 - -
Ssu3g1473 236 ProSitePatterns Ribosomal protein S8e signature. 27 46 IPR018283 GO:0003735|GO:0005840|GO:0006412
Ssu3g1473 236 Coils Coil 160 180 - -
Ssu3g1473 236 Gene3D - 135 231 - -
Ssu3g1473 236 Pfam Ribosomal protein S8e 21 215 IPR022309 -
Ssu3g1473 236 Gene3D - 48 134 - -
Ssu3g1473 236 PANTHER 40S RIBOSOMAL PROTEIN S8 18 236 IPR001047 GO:0003735|GO:0005840|GO:0006412
Ssu3g1473 236 TIGRFAM eS8: ribosomal protein eS8 18 217 IPR001047 GO:0003735|GO:0005840|GO:0006412
Ssu3g1473 236 PANTHER 40S RIBOSOMAL PROTEIN S8 18 236 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1473 Ssu-Chr3 38457343 38459699 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g1473 18 224 Cytoplasmic Ribosomal Protein Gene Family AT5G59240 84.058 1.46e-124 350
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1473 K02995 - cit:102615250 390.193