Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1471 ATGGAAGACTTCGATATTCCCGGCGGCGAGGAAATGGATCTCGGCGAAGACAAGGTCGGCGAGGAGAGGGAGATCGGCTCCCGCGGCCTCAGGAAGAAGCTCGTCAAGGAAGGTGAAGGTTGGGAAACCCCCGAAGTCGGCGACGAAGTTCAAGttCATTACACGGGGACTTTGCTCGATGGGACTAAGTTCGATTCGAGCCGCGACAGAGATTCTCCTTTCAGCTTCACGCTCGGACAAGGACAAGTAATTAAAGGATGGGATGAAGGTATTAAAACCATGAAGAAAGGTGAAAATGCTATTTTCACCATCCCTCCTGAGCTAGCTTATGGTGAATCTGGTTCCCCTCCAACGATTCCTCCTAATGCTACACTCCAATTTGATGTTGAACTGCTGTCATGGACTAGTGTAAAGGACATATGCAAGGATGGcggtatatttaaaaagatactTACTGAAGGGGAGAAATGGGAGAACCCTAAGGATCCTGATGAAGTATTGGTTAAGTATGAAGCTCATCTAGAAGATGGAAAGCTTGTAGCAAAGTCTGATGGAGTGGAGTTCACAGTCAGAGAGGGTCATTATTGTCCTGCATTGTCAAAGGCTGTTAAAACCATGAAGAAGGGTGAGAAAGTGCTTTTGACAGTTAAGCCACAATATGGATTTGGTGAGAAGGGGAAGCCAGCTCAAGGTGATGAAGGTGCAGTTCCACCAAATGCAACATTGCAGATTACTCTTGAATTAGTTTCATGGAAAACTGTTTCAGAAGTAACTGATGACAAGAAGGTCATTAAGAAGATCCTCAAGGAAGGGGAAGGATATGAGCGTCCAAATGAGGGGGCCATTGTGAAAGTGAAACTGATTGGTAAGCTGCAAGATGGTACTGCCTTTGTGAAAAAGGGCCATGATGAAGAAGAGCTGTTTGAATTCAGAACAGATGAGGAACAAGTTGTTGATGGACTTGATAGAGCTGTATTGACTATGAAGAAGGGTGAGGTTGCATTGTTGACCATTGCACCTGAGTATGCTTTTGGTTTGTCAGAGTCCCAGCAGGAGTTGGCTGTGATTCCTCCTAACTCAACTGTGTATTTTGAAGTTGAGCTAGTGTCATTTGAGAAAGAGAAGGAGTCCTGGGATCTGAACACTCAAGAGAAACTTGAAGCTGCTggtaagaagaaagaagaaggaaatgTGTTGTTTAAAGCTGGTAAATATGCAAGAGCTTCCAAAAGATATGAAAAGGCTGTGAAGTGCATAGAATATGATTCCTCCTTTGGTGAGGAGGAGAAAAAGCAGGCCAAGACCTTGAAGGTTGCTTGCAATCTGAACAATGCTGCTTGCAAGTTGAAGTTAAAAGACTATAAAGAAGCAGAGAAATTGTGTACGAAGGTATTGGACCTTGAGAGTACAAACGTGAAAGCTCTCTATAGAAGGGCCCAAGCATATATGCAGTTGGCTGACTTGGATTTGGCTGAATTTGACATTAAGAAAGCTCTTGAGATTGACCCTAACAACAGGGATGTCAAATTGGAGTACAGGACTTTGAAGGAAAAGGTGAAAGAGAATAATAGAAAGGAGGCGAAATTTTATGGAAATATGATCAACAAGTTGACAAATATTGGTTCCTGA 1629 0.4248 MEDFDIPGGEEMDLGEDKVGEEREIGSRGLRKKLVKEGEGWETPEVGDEVQVHYTGTLLDGTKFDSSRDRDSPFSFTLGQGQVIKGWDEGIKTMKKGENAIFTIPPELAYGESGSPPTIPPNATLQFDVELLSWTSVKDICKDGGIFKKILTEGEKWENPKDPDEVLVKYEAHLEDGKLVAKSDGVEFTVREGHYCPALSKAVKTMKKGEKVLLTVKPQYGFGEKGKPAQGDEGAVPPNATLQITLELVSWKTVSEVTDDKKVIKKILKEGEGYERPNEGAIVKVKLIGKLQDGTAFVKKGHDEEELFEFRTDEEQVVDGLDRAVLTMKKGEVALLTIAPEYAFGLSESQQELAVIPPNSTVYFEVELVSFEKEKESWDLNTQEKLEAAGKKKEEGNVLFKAGKYARASKRYEKAVKCIEYDSSFGEEEKKQAKTLKVACNLNNAACKLKLKDYKEAEKLCTKVLDLESTNVKALYRRAQAYMQLADLDLAEFDIKKALEIDPNNRDVKLEYRTLKEKVKENNRKEAKFYGNMINKLTNIGS 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1471 542 MobiDBLite consensus disorder prediction 1 30 - -
Ssu3g1471 542 SMART tpr_5 389 422 IPR019734 GO:0005515
Ssu3g1471 542 SMART tpr_5 472 505 IPR019734 GO:0005515
Ssu3g1471 542 SMART tpr_5 438 471 IPR019734 GO:0005515
Ssu3g1471 542 Gene3D Tetratricopeptide repeat domain 375 532 IPR011990 GO:0005515
Ssu3g1471 542 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 163 252 IPR001179 GO:0003755
Ssu3g1471 542 SUPERFAMILY FKBP-like 257 389 - -
Ssu3g1471 542 PANTHER PEPTIDYLPROLYL ISOMERASE 2 258 - -
Ssu3g1471 542 PANTHER PEPTIDYLPROLYL ISOMERASE 261 371 - -
Ssu3g1471 542 PANTHER PEPTIDYLPROLYL ISOMERASE 371 542 - -
Ssu3g1471 542 SUPERFAMILY FKBP-like 139 255 - -
Ssu3g1471 542 Coils Coil 505 525 - -
Ssu3g1471 542 Gene3D - 24 137 IPR046357 GO:0003755
Ssu3g1471 542 Pfam Tetratricopeptide repeat 472 505 IPR001440 GO:0005515
Ssu3g1471 542 MobiDBLite consensus disorder prediction 11 30 - -
Ssu3g1471 542 Gene3D - 138 252 IPR046357 GO:0003755
Ssu3g1471 542 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 280 372 IPR001179 GO:0003755
Ssu3g1471 542 SUPERFAMILY FKBP-like 21 148 - -
Ssu3g1471 542 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 47 135 IPR001179 GO:0003755
Ssu3g1471 542 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 2 258 - -
Ssu3g1471 542 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 261 371 - -
Ssu3g1471 542 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 371 542 - -
Ssu3g1471 542 ProSiteProfiles TPR repeat profile. 472 505 IPR019734 GO:0005515
Ssu3g1471 542 SUPERFAMILY TPR-like 378 535 IPR011990 GO:0005515
Ssu3g1471 542 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 42 132 IPR001179 GO:0003755
Ssu3g1471 542 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 158 249 IPR001179 GO:0003755
Ssu3g1471 542 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 274 369 IPR001179 GO:0003755
Ssu3g1471 542 Gene3D - 253 373 IPR046357 GO:0003755
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1471 Ssu-Chr3 38410192 38414775 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g1471 18 540 Calmodulin-binding Proteins AT3G25230 82.634 0.0 875
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1471 K09571 - gmx:100812632 1019.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g1471 3 38410192 38414775 Ssu2g0603 2 34831816 34836031 PCT