Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1470 ATGGCCAAAAGATACGAGGGATGTGCAGTGGGAATCGATCTTGGCACAACTTACTCGTGTGTTGCAGTATGGCAGGAGCAGCACTGTCGAGTGGAGATCATCCACAACGACCAAGGCAACAACACCACTCCTTCTTTTGTTGCTTTCACGGATCACCAAAGGTTGATTGGTGATGCTGCTAAAAATCAGGCGGCCGCCAATCCGGAGAACACTGTCTTCGATGCTAAGAGGTTGATTGGTAGGAAATATAGTGATCCCATCATTCAGAAAGATAAAATCTTTTGGCCATTCAAGGTCGTTGCTGGTAATAATGACAAACCCATGATCGGCATTGACTTCTACTCTTCAATCACTCGTGCAAAGTTTGAGGAAATCAATATGGAGCTCTTTGAAGAATGTATGGAGACAGTAGATAGATGTCTTACTTATGCTAAGATGGAAAAGAGCCATGATTCCCAAAGTGCAGGAGCTATTGCAGGACTTCTTCGGGGAAAAGATCTGTGCAAGAGTATCAACCCTGACGAAGCTGTTGCTTACGGTGCAGCTGTGCAAGCTGCTTTGTTGAGTGAAGGCATTAAGAATGTTCCAAACTTGGTACTGTCGGATGTTACACCACTATCCCTTGGTGCATCCACACATGTGGGTGTCATGAGTGTGGTGATTCCTAGGAACACTTCCATTCCTGTCAGGAAGACAGAAGTATACTCTACAATAAAAGATAACCAACATGCAGTCCAAATTAATGTTTATGAGGGCGAGAGAACAAGAGCCAAGGACAACAACTTGTTGggttcttttgttctttctgGTTTTCCTCCTGCTCCTCGTGGTCATCCTTTGTATGTATGCTTTGCTATAGATGCAAATGGTATCTTAACTGTTTCTGCTGAGGAAAAAACCAATGGTACTAAGAGTGAGATTACCATAATCAATGGCAAAGAAAGACTGTCAGCTGAAGAAATTGGAAGATTGATTCAAGAAGCTGAGAAGTACCGGGAGGAAGATAAAAGGTTCCTTAGGAAGGCCAAAGCAATGAATTCTTTGGATCGTTACGTGTACAAGATGAGAAATGGTTTGAAGAGGAAGGATATCAGTTCAAAGCTTTGCTCACCAGCAAGGAAGAAGATCAATTCTGCAATTACTAAGGCCACAAATTTGCTAGATAGTAATAACCAACAGGACGAAGCAGAGGTGTTTGAGGATTATTTGAAGGATCTTGCTAGTCACTTTGAACCCATCGTGGGCAAGATTGATTAA 1257 0.4216 MAKRYEGCAVGIDLGTTYSCVAVWQEQHCRVEIIHNDQGNNTTPSFVAFTDHQRLIGDAAKNQAAANPENTVFDAKRLIGRKYSDPIIQKDKIFWPFKVVAGNNDKPMIGIDFYSSITRAKFEEINMELFEECMETVDRCLTYAKMEKSHDSQSAGAIAGLLRGKDLCKSINPDEAVAYGAAVQAALLSEGIKNVPNLVLSDVTPLSLGASTHVGVMSVVIPRNTSIPVRKTEVYSTIKDNQHAVQINVYEGERTRAKDNNLLGSFVLSGFPPAPRGHPLYVCFAIDANGILTVSAEEKTNGTKSEITIINGKERLSAEEIGRLIQEAEKYREEDKRFLRKAKAMNSLDRYVYKMRNGLKRKDISSKLCSPARKKINSAITKATNLLDSNNQQDEAEVFEDYLKDLASHFEPIVGKID 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1470 418 PANTHER HEAT SHOCK PROTEIN 70KDA 110 417 IPR013126 GO:0005524|GO:0140662
Ssu3g1470 418 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 193 345 IPR029047 -
Ssu3g1470 418 Gene3D - 10 72 - -
Ssu3g1470 418 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 344 417 IPR029048 -
Ssu3g1470 418 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 194 349 IPR029047 -
Ssu3g1470 418 Pfam Hsp70 protein 111 416 IPR013126 GO:0005524|GO:0140662
Ssu3g1470 418 Gene3D Actin; Chain A, domain 4 110 132 - -
Ssu3g1470 418 SUPERFAMILY Actin-like ATPase domain 9 142 IPR043129 -
Ssu3g1470 418 PANTHER HEAT SHOCK 70 KDA PROTEIN 110 417 - -
Ssu3g1470 418 PANTHER HEAT SHOCK 70 KDA PROTEIN 4 110 - -
Ssu3g1470 418 ProSitePatterns Heat shock hsp70 proteins family signature 1. 12 19 IPR018181 -
Ssu3g1470 418 Gene3D - 169 186 - -
Ssu3g1470 418 Gene3D - 73 108 - -
Ssu3g1470 418 Gene3D - 133 168 - -
Ssu3g1470 418 Gene3D - 346 418 IPR029048 -
Ssu3g1470 418 PRINTS 70kDa heat shock protein signature 304 320 - -
Ssu3g1470 418 PRINTS 70kDa heat shock protein signature 8 21 - -
Ssu3g1470 418 PRINTS 70kDa heat shock protein signature 38 50 - -
Ssu3g1470 418 PRINTS 70kDa heat shock protein signature 60 68 - -
Ssu3g1470 418 PANTHER HEAT SHOCK PROTEIN 70KDA 4 110 IPR013126 GO:0005524|GO:0140662
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1470 Ssu-Chr3 38392142 38394108 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g1470 110 417 Calmodulin-binding Proteins AT3G12580 56.832 4.12e-114 346
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1470 K03283 - gmx:102667578 404.831