Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1469 ATGGCCAGAAGATACGAGGGATGTGCAGTGGGAATTGATCTTGGCACCACTTACTCGTGTGTTGCAGTATGGCAGGAGCAGCACTGTCGAGTGGAGATCATCCACAACGACCAAGGCAACAACACCACTCCTTCTTTTGTTGCTTTCACGGATCATCAAAGGTTGATTGGTGATGCTGCTAAAAATCAGGCTGCCACCAATCCAGAGAACACTGTCTTCgTGGACATTAGCAGGAATCCAAGAGCCTTGAGGAGGTTAAGAAGTGCCTGCGAGAGGGCAAAAAGGGCGCTCTCATATGCTGTTACTACCAACATTGAGTTAGAAGCTTTATTTAAGGGCATTGACTTCTGCTTTTCAATCACTCGTGCAAAGTTTGAGGAAATCAATATGGAGCTCTTTGAAGAGTGTATGGAGACAGTAGATAAATGTCTTACTGATGCTAAGATGGAAAAGAGTCGTGTACATGATGTTGTCCTTGTTGGTGGTTCTTCGAGGATTCCCAAAGTGCAGGAGCTATTGCAGGACTTCTTTGAGGGAAAGGACTTGTGCAAGAGCATCAACCCTGACGAGGCTGTTGCTTATGGTGCAGCTGTGCAGGCTGCTTTGTTGAGTGAAGGCATCAAGAATGTTCCAAACTTGGTACTGTCGGATGTTACACCACTATCCCTAGGTATATCCACATGTATAGGGGCCATGAGTGTGGTGATTCCTAGGAACACTACCATTCCTGTAAGGAAAACAGAAGTATACCATACAACAAAAGATAACGAATATGAAGTCCCAATTAATGTTTATGAGGGTGAGAGAACAAGAGCCAAGGATAACAATTTGCTGggttcttttgttctttctgGTTTTCCTCCTGCTCCTCGTGGCCATCCTTTGTATGTATGCTTTGCTATAGATGCAAATGGTATCTTATCTGTTTCTGCTGAGGAAAAAACCACTGGCAATAAGAATGATATTACCATAATCAATGACAAAGAAAGACTGTCAGCCGAAGAAATTGGAAGATTAATTCAAGAAGCTGAGAGGTACCAGGCCGAAGATAAAAAGTTCCTTAGGAAGGCCAATGCAATAAATTCTTTGGATCGGTACGTTTACAAGATGAGGAGTGCTTTGAAGAGGAAGGATATTAGTTCAAAGCTTTGCCCACCAGAAAGGAAGAAGATCAATTCTGCAATTACTAAGGCCACAAATTTGCTAGATAGTAATAACCAACAGGATGAAGCAGAGGTGTTTGAGGATTATTTGAAGGATCTTACTAGTCACTTTGAACCCATCGTGGGCAAGATTGATTAG 1302 0.4224 MARRYEGCAVGIDLGTTYSCVAVWQEQHCRVEIIHNDQGNNTTPSFVAFTDHQRLIGDAAKNQAATNPENTVFVDISRNPRALRRLRSACERAKRALSYAVTTNIELEALFKGIDFCFSITRAKFEEINMELFEECMETVDKCLTDAKMEKSRVHDVVLVGGSSRIPKVQELLQDFFEGKDLCKSINPDEAVAYGAAVQAALLSEGIKNVPNLVLSDVTPLSLGISTCIGAMSVVIPRNTTIPVRKTEVYHTTKDNEYEVPINVYEGERTRAKDNNLLGSFVLSGFPPAPRGHPLYVCFAIDANGILSVSAEEKTTGNKNDITIINDKERLSAEEIGRLIQEAERYQAEDKKFLRKANAINSLDRYVYKMRSALKRKDISSKLCPPERKKINSAITKATNLLDSNNQQDEAEVFEDYLKDLTSHFEPIVGKID 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1469 433 ProSitePatterns Heat shock hsp70 proteins family signature 3. 157 171 IPR018181 -
Ssu3g1469 433 SUPERFAMILY Actin-like ATPase domain 9 73 IPR043129 -
Ssu3g1469 433 PANTHER HEAT SHOCK 70 KDA PROTEIN 4 74 - -
Ssu3g1469 433 PANTHER HEAT SHOCK PROTEIN 70KDA 4 74 IPR013126 GO:0005524|GO:0140662
Ssu3g1469 433 Gene3D - 361 433 IPR029048 -
Ssu3g1469 433 PANTHER HEAT SHOCK PROTEIN 70KDA 74 432 IPR013126 GO:0005524|GO:0140662
Ssu3g1469 433 Gene3D - 136 183 - -
Ssu3g1469 433 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 209 364 IPR029047 -
Ssu3g1469 433 PANTHER HEAT SHOCK 70 KDA PROTEIN 74 432 - -
Ssu3g1469 433 Gene3D - 10 72 - -
Ssu3g1469 433 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 208 360 IPR029047 -
Ssu3g1469 433 SUPERFAMILY Actin-like ATPase domain 70 204 IPR043129 -
Ssu3g1469 433 Pfam Hsp70 protein 9 73 IPR013126 GO:0005524|GO:0140662
Ssu3g1469 433 Pfam Hsp70 protein 74 431 IPR013126 GO:0005524|GO:0140662
Ssu3g1469 433 Gene3D Actin; Chain A, domain 4 74 135 - -
Ssu3g1469 433 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 359 432 IPR029048 -
Ssu3g1469 433 ProSitePatterns Heat shock hsp70 proteins family signature 1. 12 19 IPR018181 -
Ssu3g1469 433 PRINTS 70kDa heat shock protein signature 38 50 - -
Ssu3g1469 433 PRINTS 70kDa heat shock protein signature 8 21 - -
Ssu3g1469 433 PRINTS 70kDa heat shock protein signature 60 68 - -
Ssu3g1469 433 Gene3D - 184 201 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1469 Ssu-Chr3 38210526 38212491 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g1469 1 73 Calmodulin-binding Proteins AT3G12580 76.712 2.42e-29 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1469 K03283 - gmx:102667578 528.094