Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1463 ATGGGAAAGCTCATGCATGCGGTTCAGTACAACAGCTACGGTGGAGGACCTGCTGGCTTAAAGCATGTGGAAGTTCCCTTACCCACTCCCAGTAAAGATGAGGTTTTGATTAAGTTGGAAGCAGCTAGTCTAAATCCATTTGATTGGAAAGTACAGAAAGGCATGTTGTGGCCACTTTTGCCTTGCAACTTCCCATATATACCTGGCACCGATATAGCAGGAGAGGTCATGGAGGTTGGTCAAGGTGTCCGGAAGTTCAAACCTGGAGACAAAGTTGTAGCCCTTGTTAGCCCCTTTaGTGGTGGAGGACTGGCTGAGTTTGCTGTTGCTAAGGAGAGCATCATTGCATCAATACCATCAGAAATCTCAGCATCTGAATGTGCTGGCTTACCTATAGCAGGTCTGACAGCTCTTCAGGCACTCACCAAATCCATAGGGATCAAACTTGATGGGAGTGGTGAACCGAAAAACATTTTGATCACTGCTGCATCAGGTGGTGTAGGTCACTATGCTGTCCAACTGGCAAAGCTGGGAAACACTCATGTGACGGCAACGTGTGGAGCTCGCAACATTGAATTGGTCAAAAGCTTAGGGGCTGATGAGGTAATTGACTACAAGACCCCAGATGGTGCTGCTTTGAAGAGTCCATCTGGTAAGAAATATGATGCTGTGATTCACTGTGCAGTGGGCTTTCCTTGGTCCACCTTTGAGCCTAACTTGGCCTTGAATGGGAAGGTTGTAGACATAACTCCAAGCTCTGCTTCAATGTTGACATTTGCTGTGAAGAAACTTACCTTCTCCAAAAAGCAACTTGTGCCTTTGCTTTTATTTCCCAAGGGTAATGGCCTTCAATATCTTATTGATTTAGTCAAGGAAGGAAAGCTCAAAACAGTTGCAGACTCCAAATATCCTCTAACCAAGGCTGAAGATGCCTGGGCTAAGAGTATTGATGGTCATGCAACTGGGAAGATCATTATTGAGTTCTAG 987 0.4559 MGKLMHAVQYNSYGGGPAGLKHVEVPLPTPSKDEVLIKLEAASLNPFDWKVQKGMLWPLLPCNFPYIPGTDIAGEVMEVGQGVRKFKPGDKVVALVSPFSGGGLAEFAVAKESIIASIPSEISASECAGLPIAGLTALQALTKSIGIKLDGSGEPKNILITAASGGVGHYAVQLAKLGNTHVTATCGARNIELVKSLGADEVIDYKTPDGAALKSPSGKKYDAVIHCAVGFPWSTFEPNLALNGKVVDITPSSASMLTFAVKKLTFSKKQLVPLLLFPKGNGLQYLIDLVKEGKLKTVADSKYPLTKAEDAWAKSIDGHATGKIIIEF 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1463 328 Pfam Zinc-binding dehydrogenase 197 326 - -
Ssu3g1463 328 SUPERFAMILY GroES-like 5 144 IPR011032 -
Ssu3g1463 328 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 122 276 IPR036291 -
Ssu3g1463 328 PANTHER ZINC-TYPE ALCOHOL DEHYDROGENASE-LIKE PROTEIN C16A3.02C 3 327 - -
Ssu3g1463 328 SMART PKS_ER_names_mod 15 326 IPR020843 GO:0016491
Ssu3g1463 328 CDD MDR1 8 326 - -
Ssu3g1463 328 Gene3D - 141 279 - -
Ssu3g1463 328 Gene3D - 12 326 - -
Ssu3g1463 328 PANTHER ZINC-TYPE ALCOHOL DEHYDROGENASE-LIKE PROTEIN C16A3.02C-RELATED 3 327 - -
Ssu3g1463 328 Pfam Alcohol dehydrogenase GroES-like domain 33 94 IPR013154 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1463 Ssu-Chr3 38037413 38040698 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g1463 63 208 Monolignol Biosynthesis Gene Families AT4G37980 28.889 5.61e-07 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1463 K00224 - gmx:100815485 595.89