Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1460 atggCTGCCAATTTCTGGACATCATCTCATTACAAGCATCTTCTGGAACAGGAAGATGTGGATATGGTGAATCCACTTGACAAGGAAAAGGGTATCACACTGGAGGATTTTAAGCTCATTAAGATGCACATGGTCAATTATATTTTGAAATTGGCACAACAAGTAAAAGTGAGGCAAAGGGTTGTGGCCACAGCAGTTACATACATGAGGCGTGTTTACACCAGgaaGAGTATGACAGAATATGATCCACACTTGGTAGCTTCAACATGCTTGTACCTGGCATCAAAAGCAGAAGAAAGCACAGTGCAGGCTCGGCTTCttgtattttacattaaaaaatcatATACTGATGAGAAGTATAAATATGAAATCAAGGACATACTTGAAATGGAAATGAAGATTTTAGAAGCTCTTAATTATTACCTGGTTGTATACCACCCATACCGTTCACTGTCTCCGTTGCTTCAGGATGCAGGTCTAAATGATCTAAACATGACTCAACTAACTTGGGGGCTTGTAAATGACACATACAAGATGGACCTAATTCTTGTACATCCTCCGCATTTGATTGCTTTAGCTTGcatatacattgttagtgtactCAGGGATAAAGACACCACTGCTTGGTTTGAAGAACTTCGTGTTGATATGAACGTGgttaaaaatatatcaatggagatacttgatttttatgaaagCAATAGAATGTTCACTGATGAGAGAATCAACGCTGCTCTCCAGAAGTTGGCCTTGAGGCCCTAA 762 0.3635 MAANFWTSSHYKHLLEQEDVDMVNPLDKEKGITLEDFKLIKMHMVNYILKLAQQVKVRQRVVATAVTYMRRVYTRKSMTEYDPHLVASTCLYLASKAEESTVQARLLVFYIKKSYTDEKYKYEIKDILEMEMKILEALNYYLVVYHPYRSLSPLLQDAGLNDLNMTQLTWGLVNDTYKMDLILVHPPHLIALACIYIVSVLRDKDTTAWFEELRVDMNVVKNISMEILDFYESNRMFTDERINAALQKLALRP 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1460 253 CDD CYCLIN 43 135 IPR013763 -
Ssu3g1460 253 Gene3D - 7 240 - -
Ssu3g1460 253 SMART cyclin_7 149 229 IPR013763 -
Ssu3g1460 253 SMART cyclin_7 46 136 IPR013763 -
Ssu3g1460 253 Pfam Cyclin, N-terminal domain 41 142 IPR006671 -
Ssu3g1460 253 SUPERFAMILY Cyclin-like 146 237 IPR036915 -
Ssu3g1460 253 Gene3D - 19 143 - -
Ssu3g1460 253 PANTHER CYCLIN 4 248 IPR043198 GO:0006357|GO:0016538
Ssu3g1460 253 PANTHER CYCLIN-C1-2-LIKE ISOFORM X1 4 248 - -
Ssu3g1460 253 PIRSF Cyclin_C_H_G 1 253 - -
Ssu3g1460 253 SUPERFAMILY Cyclin-like 4 144 IPR036915 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1460 Ssu-Chr3 37984168 38001195 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g1460 60 199 Core Cell Cycle Gene Families AT5G27620 28.000 1.25e-10 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1460 K15161 - gmx:100784345 468.774