Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1419 atgatggaaGGTCGCCGGAGGGTAACGCTATATGAACAAATGTCAGCTTCCGATAGCAGCCGAGCCCGAGTGCTAGCCGGCTTGACCCTTGACGACGTGTTAGCCAACCAGAAGAGACCTTCCTCAACGCCGCCCAGCCAACAACCACCCAAAAGCCGCACCCTACTTGACATCATCAAAGAAGACGAGACCAACAAGAAGGACCGCAGATCTTGGAAAGCCTTCAAGGACAAGCTTCGGCTCAAGCGCGCAGGCTCTGCTTGGACGTCGTCAATTCATATCCCGACTTCGGATGTCCCTGTCCCTCACCCGAACAGCAGAACCTTTACCCAGTTTGGTCGCCGCAACTCGGTCCGTTTCCCGACTCACTCCAACTCGGACATGTCAACTCAGTACAAGGCTCACCAGGTCGAAGACCTCGACCCAACCACCGACGGCTCCGGTTCTCCGGCCACCGCGCCGGCCGCCCGCCCCCAGTTCAACCGCCACGGCTCCACCCGCTTCGCCGGCGACACCTCCGACAACACCGCCGGCACCCTGCGGCCGCAGCTCTCGCGCCGGAACTCCACCACCGTGCCGTCGGAGCCCTACCGGCGGGGCCGAGTGGTGACTTTCCGCGACAGCTTCGACGACGACGAGGCCGACGATGACGACAAGCCGGACGCGGGGAGGACGCTGTCGGCGAGGGAGGCGGTGGCGGCGCAGGAGGCGGCGGaagcggcggcggcggcggaggcAGAGGCTGCGGCCGCAGAGCAGGCGCCGGTGACGATGTCGCTGATGGACTTGTTAGAGGAGACTGACAGGGAGATGGGGCTTGAAGGCTCAAGGTATATATTGAGCGATGATGAAGACTTTGATGAggatgaagatgaagaagggGAAGATGATGAGGATGGAGAAGGTGCAATGGAGTACACTTGCTGTGTTTGCATGGTGAGGCACAAGGCTGCTGCTTTTATACCTTGTGGCCACACTTTCTGCAGGATGTGTTCAAGGGAGCTTATGGTTAGTAGGGGGAATTGCCCACTCTGCAACAATTTCATTTTGGAGATTCTtgacattttttga 1071 0.5602 MMEGRRRVTLYEQMSASDSSRARVLAGLTLDDVLANQKRPSSTPPSQQPPKSRTLLDIIKEDETNKKDRRSWKAFKDKLRLKRAGSAWTSSIHIPTSDVPVPHPNSRTFTQFGRRNSVRFPTHSNSDMSTQYKAHQVEDLDPTTDGSGSPATAPAARPQFNRHGSTRFAGDTSDNTAGTLRPQLSRRNSTTVPSEPYRRGRVVTFRDSFDDDEADDDDKPDAGRTLSAREAVAAQEAAEAAAAAEAEAAAAEQAPVTMSLMDLLEETDREMGLEGSRYILSDDEDFDEDEDEEGEDDEDGEGAMEYTCCVCMVRHKAAAFIPCGHTFCRMCSRELMVSRGNCPLCNNFILEILDIF 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1419 356 MobiDBLite consensus disorder prediction 35 53 - -
Ssu3g1419 356 Coils Coil 234 254 - -
Ssu3g1419 356 Pfam Zinc finger, C3HC4 type (RING finger) 306 349 - -
Ssu3g1419 356 CDD RING-HC 308 345 - -
Ssu3g1419 356 SUPERFAMILY RING/U-box 307 352 - -
Ssu3g1419 356 MobiDBLite consensus disorder prediction 35 69 - -
Ssu3g1419 356 MobiDBLite consensus disorder prediction 97 223 - -
Ssu3g1419 356 MobiDBLite consensus disorder prediction 165 195 - -
Ssu3g1419 356 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 281 356 IPR013083 -
Ssu3g1419 356 PANTHER OS01G0917900 PROTEIN 2 356 - -
Ssu3g1419 356 MobiDBLite consensus disorder prediction 276 300 - -
Ssu3g1419 356 MobiDBLite consensus disorder prediction 55 69 - -
Ssu3g1419 356 MobiDBLite consensus disorder prediction 281 300 - -
Ssu3g1419 356 PANTHER OS01G0917900 PROTEIN 2 356 - -
Ssu3g1419 356 MobiDBLite consensus disorder prediction 97 150 - -
Ssu3g1419 356 ProSiteProfiles Zinc finger RING-type profile. 308 346 IPR001841 -
Ssu3g1419 356 SMART ring_2 308 345 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1419 Ssu-Chr3 36578159 36580875 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g1419 20 356 C3H Transcription Factor Family AT3G07120 37.398 4.20e-60 196
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1419 - - gmx:100795449 525.783