Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1410 ATGGCGGAAACGGATCCTTTTCGGGTGCTCCGGAACCTGACGCGAATCGCGACCCAGATCTCGAACCTCTCCGCCTTCAAGCCCGTCATCAAGACCCAATGCTGCGACCTCAGTCGCAGAATAAGGTTCCTCACTCCCCTCTTCCTCGAATTGCAGGACGACGTCGTGTCGAGCCGCGCGGTTCCCTTCGACGCGCTTGCGTCGCTCGAAGACGCTCTCTTCAAGGTCAAGGAACTGCTCCAATTCGCTACCCGCGGAAGCCAGGTTTTCATGATACTGGAGCGAGAGCAAGTTAAGCACAAGTTCATTGATGTTGCTGTTCGTTTTGAACATGCTATAAGCAAGATCTCCTTTGACGAGCTTGATGTTTCTGAAGAAATCAAGGAGCAGGTTGCACTTGTGACCACTCAGTTTAGAAGAGCCAAAGAGCAGTTTGATCCACCGGGTCTTCAGCTTTATGAGCACCTGTTGTCTGTTTGCAACCAGAGCTATGATGTGAATACTGAAACTGCCGAACTACGTTTAATCTGTGAAAAGCTACAATTTCTCAATGTGGATGACATCAAACAAGACTCACTCGCTCTACAAAAGATGGTTGTCGACAGGGGTGGCCATTCTCAGAAAAGCATGTGGGATGTGGCATTATTGGTGCTGAAAAAAGTCCAAGATTTCTTGGTGATGGAATCTGGAAACAATATTGTGTTGCCAAGTGAGGACTTCTCTGGACATACTGATGAGTTATGTGTGAAACTATGTCCACAATCACTAGTTATACCCGATGAGTTTCGCTGCTCAATATCTCTAGAGCTAATGAAAGATCCTGTTATCATTTGCACAGGGCAGACATATGAACGATCTTGCATTAAGAAATGGCTTGAAGCAGGGCATGGAACATGTCCCAAGACTCAACAGATTCTGTCCAGCCCCGTCCTCATACCGAACCATGCTTTATATGGCCTGATATCAAGTTGGTGTGAGGCAAATGGAGTGGAACCACCTAAAAGGTTTGGAAATTTATGGCTCTGTAAGACAACATCAGATGGCTCTTCTGAATTAATAGATCTTGATATCTTAGTGAGCAAACTTTCGTCCAGTGATATTGAGGATCGACGAGGTGCAGCAGGAGAGCTCCGACTTCTTGCCAAGCAAAATGGTCAAAATCGAATGCTGATTGCGGAAGCTGGTGCTATACCCCACCTTGTTGATCTCCTCTATGCACCTGATGCTGGCACCCAAGAGCATGCAGTTACTGCTCTTCTGAACTTGTCTATCTATGTGGATAATAAAGAGCGCATCATGGCTTCTGAGGCTGTGCCGGGCATCCTTCACGTGCTAGAAAATGGTAGTATGGAAGCTCGGGAAAATGCAGCAGCCACCTTTTTCAGCCTCTCTGGGGTGGATGAGAACAGAGTGGCAATTGGTGCATCTGGAGCAATCCAGGCATTAGTTACTCTATTTTGCGAGGGAAGTCAAAGAGGGAAGGTGGATGCTGCAAAAGCACTATTCAATCTGTGTTTATCGCAAGGGAACAAAGGACGGGCAGTTAAGGCTGGTATTGTGCCTACGTTGATAGAAATGCTAACAGAACCTGATGGGGAGATGAGGGACGAGGCATTGGCAATAATGGCTGTAGTAGTTAGCCATCCTGATGGAAAAGCAGCAATTGGATCTATGAATGCTGTATCCACTTTGGTGGAATTAATCAGTAATGGATCTCCTAGGAACAAAGAGAATGCAACTTCGGTGTTGGTGCTCCTCTGCAACGGAGATCCTCTACATTTGTCAATTGTCAGTTCACTTGGGGTGATCAGTCCTCTCTTGGACCTGGCAGAAAATGGTTCAGAAAGGGGCAAGCGGAAAGCTTCCCAGCTTCTAGAGTTGATAGGAAACCATTGTGAATATACTGGGAAAACTGTCAACTAG 1923 0.467 MAETDPFRVLRNLTRIATQISNLSAFKPVIKTQCCDLSRRIRFLTPLFLELQDDVVSSRAVPFDALASLEDALFKVKELLQFATRGSQVFMILEREQVKHKFIDVAVRFEHAISKISFDELDVSEEIKEQVALVTTQFRRAKEQFDPPGLQLYEHLLSVCNQSYDVNTETAELRLICEKLQFLNVDDIKQDSLALQKMVVDRGGHSQKSMWDVALLVLKKVQDFLVMESGNNIVLPSEDFSGHTDELCVKLCPQSLVIPDEFRCSISLELMKDPVIICTGQTYERSCIKKWLEAGHGTCPKTQQILSSPVLIPNHALYGLISSWCEANGVEPPKRFGNLWLCKTTSDGSSELIDLDILVSKLSSSDIEDRRGAAGELRLLAKQNGQNRMLIAEAGAIPHLVDLLYAPDAGTQEHAVTALLNLSIYVDNKERIMASEAVPGILHVLENGSMEARENAAATFFSLSGVDENRVAIGASGAIQALVTLFCEGSQRGKVDAAKALFNLCLSQGNKGRAVKAGIVPTLIEMLTEPDGEMRDEALAIMAVVVSHPDGKAAIGSMNAVSTLVELISNGSPRNKENATSVLVLLCNGDPLHLSIVSSLGVISPLLDLAENGSERGKRKASQLLELIGNHCEYTGKTVN 640
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1410 640 PANTHER U BOX DOMAIN-CONTAINING 7 628 - -
Ssu3g1410 640 CDD RING-Ubox_PUB 262 304 IPR045210 -
Ssu3g1410 640 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 258 331 IPR013083 -
Ssu3g1410 640 Pfam U-box domain 258 328 IPR003613 GO:0004842|GO:0016567
Ssu3g1410 640 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 7 628 - -
Ssu3g1410 640 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 395 437 IPR000225 GO:0005515
Ssu3g1410 640 Gene3D - 7 119 IPR036537 GO:0007166
Ssu3g1410 640 SMART arm_5 590 630 IPR000225 GO:0005515
Ssu3g1410 640 SMART arm_5 425 465 IPR000225 GO:0005515
Ssu3g1410 640 SMART arm_5 507 547 IPR000225 GO:0005515
Ssu3g1410 640 SMART arm_5 548 588 IPR000225 GO:0005515
Ssu3g1410 640 SMART arm_5 384 424 IPR000225 GO:0005515
Ssu3g1410 640 SMART arm_5 466 506 IPR000225 GO:0005515
Ssu3g1410 640 SUPERFAMILY RING/U-box 258 334 - -
Ssu3g1410 640 Gene3D - 495 636 IPR011989 -
Ssu3g1410 640 SMART Ubox_2 261 324 IPR003613 GO:0004842|GO:0016567
Ssu3g1410 640 SUPERFAMILY ARM repeat 355 628 IPR016024 -
Ssu3g1410 640 ProSiteProfiles U-box domain profile. 257 331 IPR003613 GO:0004842|GO:0016567
Ssu3g1410 640 Gene3D - 337 494 IPR011989 -
Ssu3g1410 640 Pfam Armadillo/beta-catenin-like repeat 386 423 IPR000225 GO:0005515
Ssu3g1410 640 Pfam Armadillo/beta-catenin-like repeat 467 505 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1410 Ssu-Chr3 36094834 36104333 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g1410 11 638 U-box Gene Family AT3G46510 49.684 0.0 622
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1410 - - var:108326899 1018.45