Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1409 ATGAAGCTTACAACCAACAAAGTAACAGGTGAGAAAGTGAAACTAACTTCATGGAAAAGTCCTTCTAATCCATCCACTGGGAGCTTCTCTTTAAGTGTTGAACGCCTTAGTATGCCTGAAGTGTTCATTTGGAATGAAGCTCGCCCATTCTGGCGCACTGGTCCGTGGAATGGTAAGACCTTTACAGGACTGCCCtatatgaaaacattttatcTTAATGGGATGCATGTTGGAGATGACGGGCAAGGAAATGTTGAATTCATTTTTACAGAAGTAGAACAGGTTGGCTTTATAATCTATATTCTGAATTCAACAGGCAATTGTGAAGAGAGATGGTGGaatgaagagaagaaagagtgGGTAGTCTCATGGAATAGTCATCAATTTGAATGTGATGTTTATGGAGTATGCGGGCCTTTTGCAATATGTAATTCACAAAGCTCACCAACTTGCAGCTGTTTGAAAGGGTTTGAACCAAGGAACAGGGAGGAATGGAATAGGAAAAACTGGACTAGTGGATGTGTTAGGAGCACAAGTTTGCAGTGTGAAAGAGTCAGCAACCAAAACACAAGTGCAGATAATAAAGCAGATGGCTTTTTGAAACTGCAGACGGTTAAAGTTCCAGATTTTGCAGATGGTTCATCTCTCAGTCTTCAACCAAACATGTGCAGGAGCCGATGTTTAGAGAATTGTTCTTGCATAGCATATTCATACAATGCTGAGATTGGTTGTATTTCTTGGACTGGAAATCTAATTGACATGCAACAATTCTCAGACGGAGGACTTGATCTATATATTCGTGTAGCCTACACAGAACTTGATAAAGAGAGAAACAGGACAGTCATCATTACTATTACAGTGACAATTGGAACTACCTTAATTGTCATTTGTGCATACATCATGTGCAGAAGGATTTCTAACCACCATGGAAGAGTAATCATCAAAGGATTCCTCCAATTTAATGGAGGTGGAGCACCTGTAGAATATACAAGTGACAATGTATTTGGAGATCTGTCACAAGTCAAACTCCAGGagctattaatatttaattttgaaaagctTGTAACTGCCACAGACAACTTTCACCCATATAACAAACTTGGACAGGGTGGTTTTGGTCCAGTATACAAGGGGCAATTGCAAGATGGTCAGGAAATTGCAGTTAAAAGACTTTCTGGGGCATCTGGACAAGGTCTAGAAGAATTCATGAATGAAGTAGGGGTGATTTCCAAGCTTCAACACTGCAATCTTATACGACTTCTTGGTTGCTGTATTGAAGGGGAGGAAAAGATGTTGATTTATGAATACATGCCAAATAAAAGTTTGGACGCCTATGTCTTTGATCCATCAAAAAGTAAAGTCCTTGATTGGAGAAAAACGCTTTAG 1386 0.3838 MKLTTNKVTGEKVKLTSWKSPSNPSTGSFSLSVERLSMPEVFIWNEARPFWRTGPWNGKTFTGLPYMKTFYLNGMHVGDDGQGNVEFIFTEVEQVGFIIYILNSTGNCEERWWNEEKKEWVVSWNSHQFECDVYGVCGPFAICNSQSSPTCSCLKGFEPRNREEWNRKNWTSGCVRSTSLQCERVSNQNTSADNKADGFLKLQTVKVPDFADGSSLSLQPNMCRSRCLENCSCIAYSYNAEIGCISWTGNLIDMQQFSDGGLDLYIRVAYTELDKERNRTVIITITVTIGTTLIVICAYIMCRRISNHHGRVIIKGFLQFNGGGAPVEYTSDNVFGDLSQVKLQELLIFNFEKLVTATDNFHPYNKLGQGGFGPVYKGQLQDGQEIAVKRLSGASGQGLEEFMNEVGVISKLQHCNLIRLLGCCIEGEEKMLIYEYMPNKSLDAYVFDPSKSKVLDWRKTL 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1409 461 ProSiteProfiles Protein kinase domain profile. 361 461 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g1409 461 CDD EGF_CA 130 161 - -
Ssu3g1409 461 Gene3D Phosphorylase Kinase; domain 1 329 436 - -
Ssu3g1409 461 Pfam S-locus glycoprotein domain 51 160 IPR000858 GO:0048544
Ssu3g1409 461 ProSiteProfiles PAN/Apple domain profile. 182 269 IPR003609 -
Ssu3g1409 461 PANTHER - 1 460 - -
Ssu3g1409 461 SUPERFAMILY Protein kinase-like (PK-like) 344 459 IPR011009 -
Ssu3g1409 461 Pfam PAN-like domain 194 254 IPR003609 -
Ssu3g1409 461 SMART ntp_6 194 268 IPR003609 -
Ssu3g1409 461 Pfam Protein tyrosine and serine/threonine kinase 364 449 IPR001245 GO:0004672|GO:0006468
Ssu3g1409 461 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-13 1 460 - -
Ssu3g1409 461 CDD PAN_AP_plant 178 269 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1409 Ssu-Chr3 35990525 35992565 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g1409 281 457 Receptor kinase-like Gene Family AT4G21410 45.810 3.78e-39 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Ssu3g1409 S_locus_glycop 2.3e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1409 - - mtr:MTR_7g056430 677.937