Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1399 ATGTCTCTTTCAAGACTCGTAGAGGGTAAGCCGAACACCAACACTCTTCACCAGTTGGTGATCAAAGAAGGAGGAACACCAGCGGGAGCACTCTCATCTTCCTCTTTCCCTCCTATACCTACACATAATAAGAGAGGCAAACTCGATGATAGCGATGAAGATGTGTTCACGGTTCCAGATGTGGAAGCTGCACCAAGTGTTCATTCTGCAGCGACAAATCCAAGTAGTGGTAACGTTAATCAAAGTAACGTGACAGATCCACGGCTTCAAGCTGGCTTCGCCGGAAAGCTCCGCCGCGGAAGAAACCCTGTAGACAAGGAGTATAGACGCATCAAGAGGTTGTTAAGGAACAGGGTTTCTGCCCAACAAGCACgtgaaagaaaaaaggtttatgTAAATGACCTGGAATCAAGAGCTAAAGAGCTGGAAGACAAGAATATCAAGTTAGAAGAGCGTATTTCCACTTTGATCAATGAGAACACCATGCTCCGGAAGGTTCTTATGAACACGCGGCCCAACAAAGTTGATGAGAGCAATGAAGTGTAG 546 0.4487 MSLSRLVEGKPNTNTLHQLVIKEGGTPAGALSSSSFPPIPTHNKRGKLDDSDEDVFTVPDVEAAPSVHSAATNPSSGNVNQSNVTDPRLQAGFAGKLRRGRNPVDKEYRRIKRLLRNRVSAQQARERKKVYVNDLESRAKELEDKNIKLEERISTLINENTMLRKVLMNTRPNKVDESNEV 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1399 181 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 107 170 IPR004827 GO:0003700|GO:0006355
Ssu3g1399 181 PANTHER TRANSCRIPTIONAL ACTIVATOR HAC1 32 180 IPR044280 GO:0000981|GO:0045944
Ssu3g1399 181 SUPERFAMILY Leucine zipper domain 108 168 IPR046347 GO:0003700|GO:0006355
Ssu3g1399 181 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 112 127 IPR004827 GO:0003700|GO:0006355
Ssu3g1399 181 Coils Coil 125 159 - -
Ssu3g1399 181 Gene3D Single helix bin 128 169 - -
Ssu3g1399 181 SMART brlzneu 105 169 IPR004827 GO:0003700|GO:0006355
Ssu3g1399 181 MobiDBLite consensus disorder prediction 68 88 - -
Ssu3g1399 181 CDD bZIP_HY5-like 110 160 - -
Ssu3g1399 181 Pfam bZIP transcription factor 106 165 IPR004827 GO:0003700|GO:0006355
Ssu3g1399 181 MobiDBLite consensus disorder prediction 25 101 - -
Ssu3g1399 181 PANTHER TRANSCRIPTION FACTOR HY5-LIKE 32 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1399 Ssu-Chr3 35481051 35486129 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g1399 84 177 Basic region leucine zipper (bZIP) Transcription Factor Gene Family AT3G17609 71.429 3.49e-39 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Ssu3g1399 bZIP_1 1.3e-12 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1399 K16241 - gmx:778143 224.557