Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1388 ATGGAGAACAACGCATTCAGAGATCGAAACTTTGCGGACAATGATGAACACGAAGAAGTCCCTGATTACTTTGGTTGCTGCGTTTGTCTGGATCTATTGTACAAGCCAATTGTGCTATCTTGTGGTCACATATGCTGTTTCTGGTGTGTCTATAATTCAATGAATTGTCTGCGTGAGTCTCATTGTCCAGTATGTAGGCATCAATACTATCACTTCCCAACAGTCTGCCAAATGCTTCACTTTTTGCTTCTCAAGATCTATACTGTTGCTTACAAGAGAAGGGAAAACCAGACTCTTGaggaagaaaagaaatcagGATTCTACTCCCCTCAATTTGATCCTGATACATGTGAATCACAAGCTAAATTTGGTCATTCTGCTATCCCTTCTTCCTCTATTATGAATTTGACGTCCAACTCATGCAATGTGGGAACTTCTGAATGTATGAAGCAATCAGGGGCCACTGCCCATGAAGGAGATGAAGTCACTGTCTATTCTGATGGAGAGCCTGATATTATTGGAACTCCtgctaaagtaaaaaaattgccTCAGGAAAAGCTTTCTCTACAACAGAAATTATCAGTAGCAGATGTGACGTGTACAATGTGCAAGCAACTGCTCTTTCATCCTGTAGTTCTTAATTGTGGTCATGTATACTGTCAAACTTGTGTCATCAACATAGATGATGAGATGCTCAGATGTCAAGTTTGTCAAAGTCCACATCCAAGAGGATTTCCAAAAGTGTGTTTGGAGTTGGATCACTTTTTGGAGGAACAATTTCCTGAAGAATATGGAAAGCGGAGAGATGCCATTGAACTGAAGCAAATCAAAGTCAAACCTAAGACCTCTTCTTCTTgTTCATTGGATAATGGTAACGAAGGAGGAAGTATAGATCGGTGGACTGATCCTGACTCAAAAGTTCACATTGGAGTTGGTTGTGATTTTTGCGGGATGTTTCCAATAATTGGAGACAGATATAAATGCATCGACTGTAAGGAGAAGATGGGTTTTGATCTTTGTGGCGATTGCTATGCAACCCGCTCCAAGCTTCCTGGCCGATTTAATCAACAACACACCTCAGAGCACAAGTTCAGTCTTGTACAAGCTAACATTGTTCATAACATAATGTTGACGCTGGCCACAACACAGTTAGGGGACACTTCTATTCACCTGGAGTCGTCTGTAGGAAACTTAGAAATTACTTCAGATAGTGCCGCATTGTTTGATGATGGAGAAGATAACCACAGTGATTCTGAAGCCACCAGTTGA 1269 0.3995 MENNAFRDRNFADNDEHEEVPDYFGCCVCLDLLYKPIVLSCGHICCFWCVYNSMNCLRESHCPVCRHQYYHFPTVCQMLHFLLLKIYTVAYKRRENQTLEEEKKSGFYSPQFDPDTCESQAKFGHSAIPSSSIMNLTSNSCNVGTSECMKQSGATAHEGDEVTVYSDGEPDIIGTPAKVKKLPQEKLSLQQKLSVADVTCTMCKQLLFHPVVLNCGHVYCQTCVINIDDEMLRCQVCQSPHPRGFPKVCLELDHFLEEQFPEEYGKRRDAIELKQIKVKPKTSSSCSLDNGNEGGSIDRWTDPDSKVHIGVGCDFCGMFPIIGDRYKCIDCKEKMGFDLCGDCYATRSKLPGRFNQQHTSEHKFSLVQANIVHNIMLTLATTQLGDTSIHLESSVGNLEITSDSAALFDDGEDNHSDSEATS 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1388 422 SUPERFAMILY RING/U-box 14 72 - -
Ssu3g1388 422 ProSiteProfiles Zinc finger RING-type profile. 26 66 IPR001841 -
Ssu3g1388 422 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 110 IPR013083 -
Ssu3g1388 422 SUPERFAMILY RING/U-box 195 241 - -
Ssu3g1388 422 CDD RING-HC 26 65 - -
Ssu3g1388 422 SMART ring_2 26 65 IPR001841 -
Ssu3g1388 422 SMART ring_2 200 237 IPR001841 -
Ssu3g1388 422 Pfam Zinc finger, ZZ type 309 348 IPR000433 GO:0008270
Ssu3g1388 422 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 186 286 IPR013083 -
Ssu3g1388 422 Pfam RING-type zinc-finger 200 224 IPR027370 -
Ssu3g1388 422 Gene3D - 302 367 IPR043145 -
Ssu3g1388 422 SUPERFAMILY RING/U-box 305 367 - -
Ssu3g1388 422 ProSiteProfiles Zinc finger ZZ-type profile. 308 372 IPR000433 GO:0008270
Ssu3g1388 422 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRT1-LIKE 11 410 - -
Ssu3g1388 422 ProSiteProfiles Zinc finger RING-type profile. 200 238 IPR001841 -
Ssu3g1388 422 ProSitePatterns Zinc finger RING-type signature. 215 224 IPR017907 -
Ssu3g1388 422 PANTHER UNCHARACTERIZED 11 410 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g1388 15 66 C3H Transcription Factor Family AT1G74990 41.509 4.02e-08 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1388 - - gmx:100787174 766.918