Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1386 ATGAAGTCCACTATGCCTCAGAATCAGAGTAATTGGGAAGCTGATAAAATGCttgatgtttatatttatgattatttaataaaaagaaaattacatgcCGCTGCAAAAGCTTTTGTGACAGAAGGAAAAGTTTCCACGGATCCAGTAGCAATTGATGCACCTGGTGGATTTCTTTACGAGTGGTGGTCTGTCTTTTGGGACATATTCATCTCAAGGGCAAATGAGAAACATTCTGAGGCTGGTGCAGCTTACATTGAGaccCAGCAAACAAAAGTTAGAGAACAACAACTTCAAATGCAGCAATTGCAACTAATGCAGCAACGCAGGTGCACAGTTACAGCGAAGAGATCCTAA 354 0.3729 MKSTMPQNQSNWEADKMLDVYIYDYLIKRKLHAAAKAFVTEGKVSTDPVAIDAPGGFLYEWWSVFWDIFISRANEKHSEAGAAYIETQQTKVREQQLQMQQLQLMQQRRCTVTAKRS 117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1386 117 Coils Coil 85 105 - -
Ssu3g1386 117 SMART Lish 14 46 IPR006594 GO:0005515
Ssu3g1386 117 Pfam LisH 16 41 IPR006594 GO:0005515
Ssu3g1386 117 ProSiteProfiles LIS1 homology (LisH) motif profile. 14 46 IPR006594 GO:0005515
Ssu3g1386 117 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 9 112 IPR044716 GO:0003714
Ssu3g1386 117 PANTHER TRANSCRIPTION FACTOR WD40-LIKE FAMILY-RELATED 9 112 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1386 Ssu-Chr3 35148053 35149694 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Ssu3g1386 LisH 4.7e-08 CL0561
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1386 - - gmx:100799686 199.904