Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1382 ATGGCTTTCTTAATCTCCCTCTTTTTTCTGCTCCtgcttctttcttttcaatcttcATCTTCTCTATCGTCACTGAACAAGGGGTCCTCCCTCTCAGTGGAGAAATACGCAGAAGACGTTATTGTCTCCCCAAATCAAATGTTCTGCGCCGGCTTCTTTCAAGTTGGTGAAAACGCCTTCTCCTTTGCCATATGGTTCAACGAGCCTCGCACTCACAATAACAACCCCGTGGTTTGGATGGCAAACCGTGAACAACCCGTTAATGGAAAGCTCTCAAAGCTTTCCCTCTTACGTAGCGGTAACATTGTCTTGGTTGACGCAGGTCAACTCACCACTTGGTCATCAAACACAGCATCAAATGCCCCAGTAGAGTTGCATCTCAAAGATGACGGAAATCTTGTGTTACGTGAGCTCCAAGGAACTACTTTGTGGCAAAGTTTTGCTTCCCCAACTGATACTCTCCTTCCCGGTCAGCCTCTTACTAGATACACACAACTTGTGTCTTCAAGAAGCCAGACTAACCATTCATCTGGTTTCTATAAGATGCTCTTTGACAATGATAACGTTCTTCGTCTTATTTATGATGGTCCTGATGTTTCAAGCACATATTGGCCACAACCTTGGTTAGTAAGTTGGGCAGCTGGAAGGTCTAGTTACAACAGCAGCAGAGTTTCAGTGTTAAATTCTCTTGGAAATTTCACTTCAGCGGATAATTATACCTTTTCAACCAATGATCATGGCACGGTGATGCCAAGAAGATTAACACTTGATTCTGATGGTAACGTTCGTGTGTACAGTAGAAATGAGGCGTTGAAGCAATGGTACGTTTCATGGCAAGTCATATTTGATACATGCACCATTCATGGGATTTGTGGTGCTAACAGCACTTGTAATTTTGATCCTAAAATAGGAAGGAGGTGCTCTTGTTTACCAGGATTCAGAGTAAAGAACCATAGTGATTGGTCTTATGGGTGTGAGCCCTTGTTTTATCTTACTTGCAATAGAAATGAGTCTACCTTTTTGGAGATGCAGGGTGTCGAGTTTTACGGTTATGACAGCCATTATGTCAAAAACAGTACCTACATGAATTGCATGAATTTATGTTTGCAGGATTGTAACTGCATAGGGTTTCAGTACAGATATTATGGGAACCAAGGCTCTAGCTGCTATACAAAGACACAGTTGCTGAATGGTAGGCGTTCCCCAAGTTATGAAGGAACAATTAACTTGAGACTGCCTAACAGCAAAAACttctccaaggaagaatctGTGAGTGCAGATGATCATGTTTGTTCCGTGCAGGTTCACAAAGACTATGTTAGAAAGCCAGCAAATCGTTTTGTGAGATTTTTTCTGTGGCTGGCTACTGCAATTGGAGCTGTAGAAGTGGTTTGCTTTTTGATGATTTGGGGTTTCTTGATAAGGACGCGCCAAAAGTCTGGTGCGGATCAACAAGGCTTCCATCTTGCAGCAGTGGGATTCagaaaatatagttattctGAGTTGAAGGAGGCGACAAAGGGGTTCAGCCAAGAGATTGGAAGGGGTGCAGGAGGGGTTGTGTACAAAGGCATATTATCAGATCAAAGACATGCAGCAATAAAGAGACTCAATGAAGCTGAACAAGGAGAAGGGGAATTCCTTGCTGAAGTGAGCATCATTGGAAGGCTTAACCACATGAACTTGATTGAAATGTGGGGATATTGTGCTGAGGGAAAGCATAGGTTGTTGGTGTATGAGTATATGGAGAATGGTTCTTTGGCAGAAAATCTCACATCTAACACACTTGATTGGAGTAAGAGATACAACATTGCTCTTGGAATGGCAAGAGTTCTAGCATATCTGCATGAAGAATGCTTGGAGTGGATTTTGCATTGTGATATAAAGCCTCAAAATATTCTTCTTGATGCTAATTATCAGCCCAAGGTAGCAGATTTTGGCTTGTCCAAGCTACTAAACAGAAATAACCTCAATAACAATTCACGCTTTTCAGTGATAAGAGGAACCAGAGGGTATATGGCACCTGAGTGGGTTTACAATTTACCAATCACCTCCAAGGTTGATGTTTACAGCTATGGAATTGTTCTGTTGGAGATGATAACTGGAAAGAGTCCAACAATGGATATTGAAACAGTTGATGGAACAGAACCACACAATGGGAGGCTGGTAACATGGGTGAGAGAGGAAAAGAGGAAAACATCTTGGATCAAGCAAATCTTGGATCCTTCAATTGGGCCAAATTTTGATGTgaataagatgaaaaatttGGCTGCAGTTGCTTTGGACTGTGTAGAGGAAGACAAAGATGTAAGGCCCACCATGAAGCAAGTGGTTGAGATGCTTCAAAGCCTTGAAAGTGATGCACAGTGA 2370 0.4122 MAFLISLFFLLLLLSFQSSSSLSSLNKGSSLSVEKYAEDVIVSPNQMFCAGFFQVGENAFSFAIWFNEPRTHNNNPVVWMANREQPVNGKLSKLSLLRSGNIVLVDAGQLTTWSSNTASNAPVELHLKDDGNLVLRELQGTTLWQSFASPTDTLLPGQPLTRYTQLVSSRSQTNHSSGFYKMLFDNDNVLRLIYDGPDVSSTYWPQPWLVSWAAGRSSYNSSRVSVLNSLGNFTSADNYTFSTNDHGTVMPRRLTLDSDGNVRVYSRNEALKQWYVSWQVIFDTCTIHGICGANSTCNFDPKIGRRCSCLPGFRVKNHSDWSYGCEPLFYLTCNRNESTFLEMQGVEFYGYDSHYVKNSTYMNCMNLCLQDCNCIGFQYRYYGNQGSSCYTKTQLLNGRRSPSYEGTINLRLPNSKNFSKEESVSADDHVCSVQVHKDYVRKPANRFVRFFLWLATAIGAVEVVCFLMIWGFLIRTRQKSGADQQGFHLAAVGFRKYSYSELKEATKGFSQEIGRGAGGVVYKGILSDQRHAAIKRLNEAEQGEGEFLAEVSIIGRLNHMNLIEMWGYCAEGKHRLLVYEYMENGSLAENLTSNTLDWSKRYNIALGMARVLAYLHEECLEWILHCDIKPQNILLDANYQPKVADFGLSKLLNRNNLNNNSRFSVIRGTRGYMAPEWVYNLPITSKVDVYSYGIVLLEMITGKSPTMDIETVDGTEPHNGRLVTWVREEKRKTSWIKQILDPSIGPNFDVNKMKNLAAVALDCVEEDKDVRPTMKQVVEMLQSLESDAQ 789
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1382 789 SMART serkin_6 507 784 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g1382 789 ProSiteProfiles PAN/Apple domain profile. 333 415 IPR003609 -
Ssu3g1382 789 CDD STKc_IRAK 513 784 - -
Ssu3g1382 789 ProSitePatterns Protein kinases ATP-binding region signature. 513 535 IPR017441 GO:0005524
Ssu3g1382 789 Gene3D Transferase(Phosphotransferase) domain 1 582 789 - -
Ssu3g1382 789 PANTHER SERINE/THREONINE KINASE, PLANT-TYPE PROTEIN 4 785 - -
Ssu3g1382 789 Pfam Protein kinase domain 510 779 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g1382 789 Gene3D Phosphorylase Kinase; domain 1 473 581 - -
Ssu3g1382 789 Pfam S-locus glycoprotein domain 234 316 IPR000858 GO:0048544
Ssu3g1382 789 SUPERFAMILY Protein kinase-like (PK-like) 488 782 IPR011009 -
Ssu3g1382 789 ProSitePatterns Serine/Threonine protein kinases active-site signature. 623 635 IPR008271 GO:0004672|GO:0006468
Ssu3g1382 789 PIRSF SRK 1 789 IPR024171 GO:0004674
Ssu3g1382 789 CDD B_lectin 41 150 IPR001480 -
Ssu3g1382 789 ProSiteProfiles Bulb-type lectin domain profile. 16 148 IPR001480 -
Ssu3g1382 789 Pfam D-mannose binding lectin 77 163 IPR001480 -
Ssu3g1382 789 CDD PAN_AP_plant 331 413 - -
Ssu3g1382 789 SUPERFAMILY alpha-D-mannose-specific plant lectins 76 205 IPR036426 -
Ssu3g1382 789 ProSiteProfiles EGF-like domain profile. 281 319 IPR000742 -
Ssu3g1382 789 ProSiteProfiles Protein kinase domain profile. 507 784 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g1382 789 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 4 785 - -
Ssu3g1382 789 Gene3D - 18 149 IPR036426 -
Ssu3g1382 789 SMART blect_4 32 150 IPR001480 -
Ssu3g1382 789 Gene3D - 150 275 IPR036426 -
Ssu3g1382 789 Pfam PAN-like domain 333 395 IPR003609 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1382 Ssu-Chr3 34985631 34988000 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g1382 497 785 Trihelix Transcription Factor Family AT5G38560 42.475 3.95e-66 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Ssu3g1382 Pkinase 1.3e-54 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1382 - - gmx:100785351 1301.19