Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1379 ATGGCTTTCTCAATCTCACTCTTTTTTCTGCTGCTGCTTTCTTTTCCATCTTCATCTTCTCTATGGTCACTGAACAAGGGGTCCTCCCTCTCAGTGGAGAAACACGCAGAAGACGTTATTGTCTCCCCAAATCAAGTGTTCTGTGCTGGCTTCTTTCCAGTTGGTGAAAACGCCTTTTCCTTTGCCATATGGTTCAACGATCCTCGCACTCACAACAACAACACCGTGGTTTGGATGGCAAACCGTGAACAACCCGTCAATGGAAAGTTCTCAAAGCTTTCCCTCTTACGTAGCGGTACCATTGTCTTGGTTGACGCAGGTCAACTCACCACTTGGTCATCAAACACAGCATCAAATACCCCAGTAGAGTTGTATCTCAAAGATGACGGAAATCTTGTGTTACGTGAGCTCCAAGGAACTACTTTGTGGCAAAGTTTTGATTCCCCAACTGATACTCTCCTTCCGATGCTCTTTGACGACGATAACATTCTTCGTCTTATTTATGATGGTCCTGATGTTTCAAGCACATATTGGCCAAAACCTTGGTTACTAAGTTGGGAAGCTGGAAGGTTTAATTACAACAGCAGCAGAGTTGCAGTGTTAAATTCTCTTGGAAATTTCACTTCAGCGGATAATTATACTTTTTCCACGAACGATCATGGCACGGTGATGCCAAGAAGGTTAACACTGGATTCTGATGGTAACGTTCGTGTGTACAGTAATGAGGCGTCAAAGCAGTGGTACGTTTCATGGCAAGTCATATTTGATACATGCACCATTCATGGGATTTGTGGTGCTAACAGCACTTGTAATTTTGATCCTAAAATGGGAAGGAGATGCTCCTGTCTACCAGGATACAGAGTAAAGAACCATAGTGATTGGTCTTATGGGTGTGAACCAGTGTTTGATCTTGCTTGCAATAGAAATGAGTCTACCTTTTTGGAGATGCAGGGTGTCGAGTTTTACGGTTATGACAACAATTATGTCCCAAACAGTACCTACATGAATTGTGTGAATTTATGTTTACAGGATTGTAACTGCAAAGGGTTTCAGTACAGATATGATGGGAACCAAGGTTCTAGCTGCTTTACAAAGATACAATTGCTGAATGGGAGGCGTTCCCCAAGTTATAAAGGAACAATTTACTTGAGACTGCCTAACAGCAAAAACttctccaaggaagaatctGTGAGTGCAGATGATCATGTTTGTTCCGTGCAGGACGCGCCAAAGTCTGGTGCGGATCAACAAGGCTTCCATCTTGCAGCAGTGGGATTCagaaaatatagttattctGAGTTGAAGGAGGCGACAAAGGGGTTCAGCCAAGAGATTGGAAGGGGTGCAGGAGGGGTTGTGTACAAAGGCATTTTATCAGATCAAAGACATGCAGCAATAAAGAGACTCAATAAAGCTGAACAAGGAGAAGGGGAATTCCTTGCTGAAGTAAGCATCATTGGAAGGCTTAACCACATGAATTTGATTGAAATGTGGGGTTATTGTGCTGAGGGAAAGCATAGGTTGTTGGTGTATGAGTATATGGAGAATGGTTCTTTGGCAGAAAATCTCACATCTAACACACTTGACTGGAGTAAGAGATACAACATTGCTCTTGGAATGGCAAGAGTTCTAGCATATCTGCATGAAGAATGCTTGGAGTGGATTTTGCATTGTGATATAAAGCCTCCAAATATTCTTCTTGATGCTAATTATCAGCCCAAGGTAGCAGATTTTGGCTTGTCCAAGCTACTAAACAGAAATAACCTCAATAACAATTCACGCTTGTCAATGATAAGAGGAACCAGAGGGTATATGGCACCTGAGTGGGTTTACAATTTACCAATCACCTCCAAGGTTGACGTTTACAGCTATGGAATTGTTCTGTTGGAGATGATAACTGGAAAGAGTCCAACAACGGATATTAGAACATTTGATGGAACAGAGCCACACAATGGGAGGTTGGTAACATGGGTGAGAGAGGAAAAGAGGAGAACATCTTGGGTCAAGCAAATCTTGGATCCTTCAATTGGGCCAAATTTTGATGTGAATAAGATGGAAATTTTGGCTACAGTTGCTTTGGACTGTGTAGAGGAAGACAAAGATGTAAGGCCCACCATGAAGCAAGTGGTTGAGATGCTTCAAAGCCTTGAAAGTGATGCACAGTGA 2166 0.4192 MAFSISLFFLLLLSFPSSSSLWSLNKGSSLSVEKHAEDVIVSPNQVFCAGFFPVGENAFSFAIWFNDPRTHNNNTVVWMANREQPVNGKFSKLSLLRSGTIVLVDAGQLTTWSSNTASNTPVELYLKDDGNLVLRELQGTTLWQSFDSPTDTLLPMLFDDDNILRLIYDGPDVSSTYWPKPWLLSWEAGRFNYNSSRVAVLNSLGNFTSADNYTFSTNDHGTVMPRRLTLDSDGNVRVYSNEASKQWYVSWQVIFDTCTIHGICGANSTCNFDPKMGRRCSCLPGYRVKNHSDWSYGCEPVFDLACNRNESTFLEMQGVEFYGYDNNYVPNSTYMNCVNLCLQDCNCKGFQYRYDGNQGSSCFTKIQLLNGRRSPSYKGTIYLRLPNSKNFSKEESVSADDHVCSVQDAPKSGADQQGFHLAAVGFRKYSYSELKEATKGFSQEIGRGAGGVVYKGILSDQRHAAIKRLNKAEQGEGEFLAEVSIIGRLNHMNLIEMWGYCAEGKHRLLVYEYMENGSLAENLTSNTLDWSKRYNIALGMARVLAYLHEECLEWILHCDIKPPNILLDANYQPKVADFGLSKLLNRNNLNNNSRLSMIRGTRGYMAPEWVYNLPITSKVDVYSYGIVLLEMITGKSPTTDIRTFDGTEPHNGRLVTWVREEKRRTSWVKQILDPSIGPNFDVNKMEILATVALDCVEEDKDVRPTMKQVVEMLQSLESDAQ 721
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1379 721 CDD STKc_IRAK 445 716 - -
Ssu3g1379 721 SUPERFAMILY alpha-D-mannose-specific plant lectins 75 179 IPR036426 -
Ssu3g1379 721 PANTHER SERINE/THREONINE KINASE, PLANT-TYPE PROTEIN 4 155 - -
Ssu3g1379 721 SMART serkin_6 439 716 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g1379 721 CDD B_lectin 40 149 IPR001480 -
Ssu3g1379 721 Gene3D Transferase(Phosphotransferase) domain 1 514 721 - -
Ssu3g1379 721 Pfam Protein kinase domain 442 711 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g1379 721 ProSiteProfiles Protein kinase domain profile. 439 716 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g1379 721 Pfam PAN-like domain 306 367 IPR003609 -
Ssu3g1379 721 ProSitePatterns Protein kinases ATP-binding region signature. 445 467 IPR017441 GO:0005524
Ssu3g1379 721 ProSiteProfiles PAN/Apple domain profile. 306 386 IPR003609 -
Ssu3g1379 721 ProSiteProfiles EGF-like domain profile. 254 292 IPR000742 -
Ssu3g1379 721 Pfam D-mannose binding lectin 75 156 IPR001480 -
Ssu3g1379 721 Pfam S-locus glycoprotein domain 200 289 IPR000858 GO:0048544
Ssu3g1379 721 PIRSF SRK 156 409 IPR024171 GO:0004674
Ssu3g1379 721 PIRSF SRK 404 721 IPR024171 GO:0004674
Ssu3g1379 721 PIRSF SRK 1 166 IPR024171 GO:0004674
Ssu3g1379 721 Gene3D - 19 147 IPR036426 -
Ssu3g1379 721 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 156 405 - -
Ssu3g1379 721 Gene3D Phosphorylase Kinase; domain 1 404 513 - -
Ssu3g1379 721 ProSiteProfiles Bulb-type lectin domain profile. 25 147 IPR001480 -
Ssu3g1379 721 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 4 155 - -
Ssu3g1379 721 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 409 717 - -
Ssu3g1379 721 SMART blect_4 31 149 IPR001480 -
Ssu3g1379 721 PANTHER SERINE/THREONINE KINASE, PLANT-TYPE PROTEIN 156 405 - -
Ssu3g1379 721 ProSitePatterns Serine/Threonine protein kinases active-site signature. 555 567 IPR008271 GO:0004672|GO:0006468
Ssu3g1379 721 CDD PAN_AP_plant 302 386 - -
Ssu3g1379 721 PANTHER SERINE/THREONINE KINASE, PLANT-TYPE PROTEIN 409 717 - -
Ssu3g1379 721 SUPERFAMILY Protein kinase-like (PK-like) 420 714 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1379 Ssu-Chr3 34910642 34913003 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g1379 429 717 Trihelix Transcription Factor Family AT5G38560 41.806 5.98e-65 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Ssu3g1379 Pkinase 2.5e-53 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1379 - - gmx:100784287 1169.84