Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1378 ATGTTTTCCTCAATCTTACTATTTCTTGTCCTACCCGTATTGTCTTTCCACTGTTCATATTCTGCATCTTTATTATCACTGAGCAAGGGCTCATCCCTCTCGGTAGAAAACCCACAAGACGTTATTGTCTCCCCCAACGGCATGTTCTCCGCGGGCTTCGTCGCCATCGGTGAAAACGCCTACTCCCTCGCCATATGGTTCACCCAAACTCATTCTCACAGCCGCCCCACAACCGTGTGGATGGCGAACCGCGAAAACCCCGTGAACGGAAAACGCTCCAAGCTTTCCCTCTTACAAACCGGCAACCTTGTCTTGGTTGACGCAGGTCAGCAAAACGTGTGGTCTTCAAACACCGTCTCATTAGCCCCAGCAGAGCTGCATCTCAAAGACGATGGCAATCTCGTGTTGCGTGAGCTGCAAGGAACCGTTCTGTGGCAGAGTTTTGACTGCCCCACTGACACTCTCCTTCCCGGTCAACCTCTTACCAGACACGCGCAACTTGTGTCCGCAAGAAGCGAGAGTAACCACTCCTCTGGTTTCTACAAGCTCTTCTtcgacgatgacaacgttcttcGCCTTCTCTACGATGGCCCTGACGTTTCCAGCGTTTACTGGCCAAATCCATGGCAAGTGAGTTGGGATGCTGGAAGGTCTACTTACAATAGCAGTAGATTTGCGGCGTTGGACTCTCTTGGAAGATTCCTTTCATCAGATGATTTTACTTTCACAACATCTGATTATGGCGTTATGAAGAATAGAAGGTTGAAAATTGATTCTGATGGTAACCTGAGGATGTATAGTCTGCATGATGACGTGTCAAACGAATGGTATGTCTCGTGGCAAGCAAAAGCTGACACGTGCTACATCCATGGAATTTGTGGAGCTAATAGCATGTGCAGTTATGATCCTAAAATTGGAAGGAAGTGCTCGTGTCTTCCAGGGTACAGAGTGAAGAACCATAGCGATTGGTCTTATGGTTGTGAACCCCTGTTTGTTTTCACCTGCAATAGAAGTGAGTCTACCTTCTTGGAGATGCCCGGTCTTGAGCTTTACGGTTATGAttctaatttttctgagccTAGTACCTATAGGTATTGTGAGAATTTGTGCTTAGAAGACTGTAATTGTAACGGGTTCCAGCACTCGTAcaataatgacaataacaatTTCATGTGCTACCTGAAGAAACAATTGCTCAATGGGAGGCGTACACCGAATTTCAAAGGAACGACATACTTGAGAGTGCCTAAAAATCATAGCCTTTTTCGTGAAGAATCCTTTGATGCGAGTGAGCATGTTTGTTCCGTACAGATTCCCAGAGCATATGTCGGAGATCATGCAAGCCGGATTGTGAGGTTTTTTCTTTGGGTTGCTATTGCGGTTGGTGCTTTGGAATCGGTTTGCATTTTGGTGGTGTGGGTCTTCACAGTTGAGACCCGCGAAAAGTCTTCTGCAGATCAACAGGGCTACCAGCTTGTGACAAATAGAttcagaaaatataattattctgaGTTGAAGGAGGCGACAAAGGGGTTCGGCCAAGAGATTGGAAGGGGTGCAGGAGGGGTTGTGTACAAAGGCATTTTATCAGATCAAAGACATGCAGCAATAAAGAGGCTCAATGAAGCTAAACAAGGAGAAGGGGAATTCCTGGCTGAAGTGAGCATCATTGGAAGGCTCAACCACATGAACTTGATTGAAATGTGGGGATACTGTGCTGAGGGAAAGCATAGGTTGTTGGTGTATGAGTATATGGAGAATGGTTCTTTGGCAGAAAATCTCTCGTCTAACACACTTGATTGGAGTAAGAGATATAACATTGCTCTTGGAACGGCCAGAGTTCTAGCGTATCTGCATGAAGAATGCTTGGAGTGGATTTTGCACTGTGATATAAAGCCCCAAAACATACTTCTTGATGCTAATTATCAGCCCAAGGTAGCAGATTTTGGCTTGTCCAAGCTATTAAACAGAAATAATCTTAACAATTCAAGTTTTTCAATGATCAGAGGAACCAGAGGATATATGGCACCTGAGTGGGTTCTCAACTTAGCAATCACCTCCAAGGTTGATGTATACAGCTATGGGATTGTTCTATTGGAGATGATAACCGGGAAGAGCCCAACAACCGTTGTCCAAAACATTGATGGAGAAGACTCATATAATGGAAGGCTGGTAACGTGGGTGAGAGAGAAAAGGAGTGGCACATCTTGGCTAGAGCACATCATTGATCCtgcaattaaaacaaattatgatgAATGTAAGATGGACCTTTTGGCTAAAGTGGCTTTGGACTGCGTGGAGGAGGACAAAGATATAAGGCCAACCATGAGCCAAGTGGTAGAAATGCTTCAAAGCCATGAAAGTGATCCTCAGTAA 2376 0.4369 MFSSILLFLVLPVLSFHCSYSASLLSLSKGSSLSVENPQDVIVSPNGMFSAGFVAIGENAYSLAIWFTQTHSHSRPTTVWMANRENPVNGKRSKLSLLQTGNLVLVDAGQQNVWSSNTVSLAPAELHLKDDGNLVLRELQGTVLWQSFDCPTDTLLPGQPLTRHAQLVSARSESNHSSGFYKLFFDDDNVLRLLYDGPDVSSVYWPNPWQVSWDAGRSTYNSSRFAALDSLGRFLSSDDFTFTTSDYGVMKNRRLKIDSDGNLRMYSLHDDVSNEWYVSWQAKADTCYIHGICGANSMCSYDPKIGRKCSCLPGYRVKNHSDWSYGCEPLFVFTCNRSESTFLEMPGLELYGYDSNFSEPSTYRYCENLCLEDCNCNGFQHSYNNDNNNFMCYLKKQLLNGRRTPNFKGTTYLRVPKNHSLFREESFDASEHVCSVQIPRAYVGDHASRIVRFFLWVAIAVGALESVCILVVWVFTVETREKSSADQQGYQLVTNRFRKYNYSELKEATKGFGQEIGRGAGGVVYKGILSDQRHAAIKRLNEAKQGEGEFLAEVSIIGRLNHMNLIEMWGYCAEGKHRLLVYEYMENGSLAENLSSNTLDWSKRYNIALGTARVLAYLHEECLEWILHCDIKPQNILLDANYQPKVADFGLSKLLNRNNLNNSSFSMIRGTRGYMAPEWVLNLAITSKVDVYSYGIVLLEMITGKSPTTVVQNIDGEDSYNGRLVTWVREKRSGTSWLEHIIDPAIKTNYDECKMDLLAKVALDCVEEDKDIRPTMSQVVEMLQSHESDPQ 791
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1378 791 ProSitePatterns Protein kinases ATP-binding region signature. 516 538 IPR017441 GO:0005524
Ssu3g1378 791 ProSitePatterns Serine/Threonine protein kinases active-site signature. 626 638 IPR008271 GO:0004672|GO:0006468
Ssu3g1378 791 Gene3D Phosphorylase Kinase; domain 1 474 584 - -
Ssu3g1378 791 PIRSF SRK 1 791 IPR024171 GO:0004674
Ssu3g1378 791 ProSiteProfiles Bulb-type lectin domain profile. 18 149 IPR001480 -
Ssu3g1378 791 Pfam S-locus glycoprotein domain 239 318 IPR000858 GO:0048544
Ssu3g1378 791 Pfam D-mannose binding lectin 77 164 IPR001480 -
Ssu3g1378 791 SUPERFAMILY alpha-D-mannose-specific plant lectins 77 207 IPR036426 -
Ssu3g1378 791 CDD STKc_IRAK 516 784 - -
Ssu3g1378 791 SUPERFAMILY Protein kinase-like (PK-like) 489 784 IPR011009 -
Ssu3g1378 791 Gene3D - 25 149 IPR036426 -
Ssu3g1378 791 Pfam Protein kinase domain 513 781 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g1378 791 Gene3D Transferase(Phosphotransferase) domain 1 585 791 - -
Ssu3g1378 791 ProSiteProfiles PAN/Apple domain profile. 335 416 IPR003609 -
Ssu3g1378 791 CDD PAN_AP_plant 334 416 - -
Ssu3g1378 791 CDD B_lectin 42 151 IPR001480 -
Ssu3g1378 791 SMART blect_4 32 151 IPR001480 -
Ssu3g1378 791 PANTHER SERINE/THREONINE KINASE, PLANT-TYPE PROTEIN 3 789 - -
Ssu3g1378 791 ProSiteProfiles Protein kinase domain profile. 510 789 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g1378 791 Gene3D - 150 274 IPR036426 -
Ssu3g1378 791 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 3 789 - -
Ssu3g1378 791 SMART serkin_6 510 783 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1378 Ssu-Chr3 34877366 34879741 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g1378 492 787 Trihelix Transcription Factor Family AT5G38560 40.328 2.38e-65 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Ssu3g1378 Pkinase 6.9e-53 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1378 - - gmx:100784287 1178.7