Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1376 ATGACAATTGAAGACGTGACACTGACACCCACAAGTAATAAAAGCATTCAGTGCTTGCATTGCATGAACATGGCTTCCTCAATCTTCCTATTTCTTCTCCTACCCGCTTTGTTTTTCCATGCATCACATTCTTCATCTTTATCACTGATCAAGGGCTCATCCCTCTCAGTAGAAAAACCAGAAGATGTTATTGTCTCCCCAAATGGCATGTTCTCCGCTGGCTTTGTTGCCATCGGTGAAAACGCCTACTCCTTTGCCATATGGTTCACCCAAACTCAAGCTCACAACCACCCCACAATTGTGTGGATGGCGAACCGTGAATACCCCGTGAACGGAAAACACTCCAAGCTTTCACTCTTACAAACCGGTAACCTTGTCTTAGTTGACGCGGGTCAACAAAACGCGTGGTCTTCAAACACTGCTTCATTAGCCCCAGCAGAGTTGCGTCTGAAAGATGATGGCAATCTTGTGTTGTGTGAGCTGCAAGGAACCATACTGTGGCAAAGTTTTGACTTCCCCACTGACACTCTCCTTCCCGGTCAACCTCTTACGAGACACACACAACTTGTGTCTGCAAGAAGCGAGACTAACCATTCGTCTGGTTTCTACAAGCTGTTCtttgatgatgacaacgttCTTCGTCTTCTCTGCGATGGCCCTGATGTTTCCAGCATTTACTGGCCATATCCCTGGCAAGTAAGTTGGGATGCTGGAAGGTCTACTTACAATAGCAGTAGATTTGCGGAGTTGGACACTCTTGGAAGATTCCATTCATCAGATGGTTTTACTTTCACAACATCTGATTATGGCGTTATGAAGAAGAGAAGATTGAAAATTGATTCTGATGGTAACTTGAGAGTGTATAGTCTGCATGATGACGTGTCAAATAAATGGTATGTTTCATGGCAAGTGAAAGGAGACACGTGCTATGTCCATGGAAATTGTGGAGCTAACAGCGTGTGTAGTTCTGATCCTAAAAATGGAAGGAAGTGCTCTTGTCTTCCAGGACACAGAATGAAGAACCATAGTGATTGGTCTTATGGTTGTGAAGCCATGTTCGTTTTCACTTGCAATAGAAGTGAGTCTACCTTTTTGGAGTTGCCGGGTGTTGAGCTTTATGGTTATGATTCTAATTTTTTGGAACCTAATACCTCTAGTTATTGTGAGAATTTGTGCTTACAAGACTGTAATTGTAAAGGGTTCCAGGTCTCATACAGTGATGGCCAGAACGATTTCAAGTGCTACACCAAGACACAATTGCTCAATGGGCGGCATAGATCATTTTTCAAAGGAAAAATGTACTTGAGAGTGCCTAAAAACCATAGCATTTTTCATGAAGAATCCTTTGCTGCAAATGAGCATGTTTGTTCTGTACAGATTCCCAGAGTGTATGTCGGAGATCATGTGAACCGGTTTGTGAGGTTTTTTCTTTGGGTTGCTATTGCAATTGGTGCTTTTGAATCGGTTTGCATTTTTGTGGTGTGGGTCTTCACAGTTAGGACACGCCAAAAGTCTTCTGCAGATCAACAGGGCTACCATCCTGAGGCAAATAGGTTCACAAAATTTAGTTATTCTGAGTTGAAGGAGGCGACAAAGGGGTTTAGTCAAGAGATTGGAAGGGGTGCAGGGGGGGTTGTGTACAAAGGCATTTTATCAGATCAAAGACATGCAGCAATAAAGAGACTCAATGACCCTAAACAAGGAGAAGGGGAATTCCTTGCTGAAGTCAGCATCATTGGAAGGCTTAACCACATGAACTTGATTGAAATGTGGGGATATTGTGCTGAGGGAAAGCATAGGTTGTTGGTGTATGAATATATGGAGAATGGCTCTTTGGCAGAAAATCTCTCATCCAACACGCTTGATTGGAGTAAGAGATATAACATTGCTCTTGGAACGGCAAGAGTTCTAGCATATCTGCATGAAGAATGCTTGGAGTGGATTTTGCACTGTGATATAAAGCCCCAAAATATACTTCTTGATGCTAATTATCAACCCAAGGTAGCAGATTTTGGCTTGTCCAAGCTACTAAACAGAAATAACCTCAACAATTCAAACTTTTCAATGATCAGAGGAACTAGAGGATATATGGCACCTGAGTGGGTTCTCAACTTAGCAATCACCTCCAAGGTTGATGTTTACAGCTATGGAATTGTTCTCTTGGAGATGATAACTGGGAAGAGCCCAACAACCGGTGTCCAAAACAATATTGATGGAGAAGACTCATATAATGGAAGGCTGGTAACATGGGTGAGAGAGAAAAGGAGTGGCACATCTTGGCTAGAGCACATCATTGATCCtgcaattaaaacaaattatgatgAATGTAAGATGGACCTTTTGGCTAAAGTGGCTTTGGACTGTGTAGAGGAGGACAAAGATATAAGGCCCACCATGAGCCAAGTGGTAGAAATGCTTCAAAGCCATCAAAGTGATCCTCAGTAA 2445 0.4213 MTIEDVTLTPTSNKSIQCLHCMNMASSIFLFLLLPALFFHASHSSSLSLIKGSSLSVEKPEDVIVSPNGMFSAGFVAIGENAYSFAIWFTQTQAHNHPTIVWMANREYPVNGKHSKLSLLQTGNLVLVDAGQQNAWSSNTASLAPAELRLKDDGNLVLCELQGTILWQSFDFPTDTLLPGQPLTRHTQLVSARSETNHSSGFYKLFFDDDNVLRLLCDGPDVSSIYWPYPWQVSWDAGRSTYNSSRFAELDTLGRFHSSDGFTFTTSDYGVMKKRRLKIDSDGNLRVYSLHDDVSNKWYVSWQVKGDTCYVHGNCGANSVCSSDPKNGRKCSCLPGHRMKNHSDWSYGCEAMFVFTCNRSESTFLELPGVELYGYDSNFLEPNTSSYCENLCLQDCNCKGFQVSYSDGQNDFKCYTKTQLLNGRHRSFFKGKMYLRVPKNHSIFHEESFAANEHVCSVQIPRVYVGDHVNRFVRFFLWVAIAIGAFESVCIFVVWVFTVRTRQKSSADQQGYHPEANRFTKFSYSELKEATKGFSQEIGRGAGGVVYKGILSDQRHAAIKRLNDPKQGEGEFLAEVSIIGRLNHMNLIEMWGYCAEGKHRLLVYEYMENGSLAENLSSNTLDWSKRYNIALGTARVLAYLHEECLEWILHCDIKPQNILLDANYQPKVADFGLSKLLNRNNLNNSNFSMIRGTRGYMAPEWVLNLAITSKVDVYSYGIVLLEMITGKSPTTGVQNNIDGEDSYNGRLVTWVREKRSGTSWLEHIIDPAIKTNYDECKMDLLAKVALDCVEEDKDIRPTMSQVVEMLQSHQSDPQ 814
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1376 814 Gene3D Transferase(Phosphotransferase) domain 1 607 814 - -
Ssu3g1376 814 SUPERFAMILY alpha-D-mannose-specific plant lectins 99 229 IPR036426 -
Ssu3g1376 814 PIRSF SRK 19 814 IPR024171 GO:0004674
Ssu3g1376 814 CDD STKc_IRAK 538 807 - -
Ssu3g1376 814 ProSitePatterns Protein kinases ATP-binding region signature. 538 560 IPR017441 GO:0005524
Ssu3g1376 814 ProSiteProfiles PAN/Apple domain profile. 357 433 IPR003609 -
Ssu3g1376 814 ProSitePatterns Serine/Threonine protein kinases active-site signature. 648 660 IPR008271 GO:0004672|GO:0006468
Ssu3g1376 814 ProSiteProfiles Bulb-type lectin domain profile. 40 171 IPR001480 -
Ssu3g1376 814 Gene3D - 173 298 IPR036426 -
Ssu3g1376 814 Pfam S-locus glycoprotein domain 263 340 IPR000858 GO:0048544
Ssu3g1376 814 Pfam PAN-like domain 357 420 IPR003609 -
Ssu3g1376 814 Gene3D Phosphorylase Kinase; domain 1 495 606 - -
Ssu3g1376 814 SMART serkin_6 532 806 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g1376 814 Pfam D-mannose binding lectin 99 187 IPR001480 -
Ssu3g1376 814 CDD B_lectin 64 173 IPR001480 -
Ssu3g1376 814 Pfam Protein kinase domain 535 804 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g1376 814 Gene3D - 46 172 IPR036426 -
Ssu3g1376 814 SUPERFAMILY Protein kinase-like (PK-like) 510 807 IPR011009 -
Ssu3g1376 814 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 25 812 - -
Ssu3g1376 814 CDD PAN_AP_plant 356 438 - -
Ssu3g1376 814 SMART blect_4 55 173 IPR001480 -
Ssu3g1376 814 PANTHER SERINE/THREONINE KINASE, PLANT-TYPE PROTEIN 25 812 - -
Ssu3g1376 814 ProSiteProfiles Protein kinase domain profile. 532 812 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1376 Ssu-Chr3 34731793 34734237 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g1376 480 807 Receptor kinase-like Gene Family AT5G45780 36.607 3.84e-65 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Ssu3g1376 Pkinase 1.3e-53 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1376 - - gmx:100784287 1160.98