Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1374 ATGCTCTTTGACAATGATAACGTTCTTAGTCTTATTTTTGATGGTCCTGATGTTTCAAGCCCATATTGGCCAAAACCTTGGTTACCCAGTTGGCAAGCTGGAAGGTTTAATTACAACAGCAGCAGAGTTGCAGTGTTAAATTCTCTTGGAAATTTCGCTTCATCGGATAATTATACATTTTCCACCAATGATCATGGCACGGTGATGCCAAGAAGGTTAACACTGGATTCTGATGGTAACGTTTGTGTGTACAGTAGAAATGAGGGGTTAAAGCAGTGCAAAAACttctccaaggaagaatctGTGAATGCAGATGATCATGTTTGTTCCGTGCAGGTTCACAAAGACTATGTTAGAAAGCTAGCAAATCGTTTTGTGAGATTTTTTCTGTGGCTCGTTACTGCAGTTGGAGCTGTAGAAGTGGTTTGTTTTTTGATGATTTGGGGTTTCTTGATAAGGATGCGCCAAAAGTCTGGTGCAGATCAACAAGACTACCATCTTGCAGCAGTGGGATTCagaaaatatagttattctGAGTTAAAGGAGGCGACAAAGGGGTTCAGCCAAGAGATTGGAAGGGATGCAGAAGGGGTTGTGTACAAAGGCATTTTATCAGATCAAAGACATGCAGCAATAAAGAGGCTCAATGAAGCTAGACAAGGAGAAGGGGAGTTTCTTGCTGAAGTGAGCATCATTGGAAGGCTCAACTACATGAACTTGATCGAAATGTGGGGATACTGTGCTGAGGGAAAGCACAGGTTGTTGGTGTATGAGTATATGGAGAATGGTTCTTTGGCAGAAAATCTCTCATCGATTACACTTGATTGGAGTAAGAGATATAGCATTGCTCTTGGAACGGCAAGAGTTCTGGCATATCTGCATGAAGAATGCTTGGAGTGGATTTTGCACTGTGATATAAAGCCCCAAAACATACTTCTTGATGCTAATTATCAGCCCAAGGTAGCAGATTTTGGCTTGTCCAAGCTACTAAACAGAAATAATCTTAACAATTCAAGTTTTTCAATGATCCGAGGGACCAGAGGATATATGGCACCTGAGTGGGTTCTCAACTTAGCAATCACCTCCAAGGTTGATGTATACAGCTATGGAATTGTTCTCTTGGAGATGATAACTGGGAAGAGCCCAACAACCGTTGTCCAAAACATTGATGGAGAAGACTCATATAATGGAAGGCTGGTAACGTGGGTGAGAGAGAAAAGGAGTGGCACATGTTGGCTAGAGCACATCATTGATCCtgcaattaaaacaaattatgatgAATGTAAGATGGACCTTTTGGCTAAAGTGGCTTTGGACTGTGTGGAGGAGGACAAAGATATAAGGCCAACCATGAGCCAAGTGGTAGAAATGCTTCAAAGACATGAAAGTGATCCTCAGTAA 1401 0.4047 MLFDNDNVLSLIFDGPDVSSPYWPKPWLPSWQAGRFNYNSSRVAVLNSLGNFASSDNYTFSTNDHGTVMPRRLTLDSDGNVCVYSRNEGLKQCKNFSKEESVNADDHVCSVQVHKDYVRKLANRFVRFFLWLVTAVGAVEVVCFLMIWGFLIRMRQKSGADQQDYHLAAVGFRKYSYSELKEATKGFSQEIGRDAEGVVYKGILSDQRHAAIKRLNEARQGEGEFLAEVSIIGRLNYMNLIEMWGYCAEGKHRLLVYEYMENGSLAENLSSITLDWSKRYSIALGTARVLAYLHEECLEWILHCDIKPQNILLDANYQPKVADFGLSKLLNRNNLNNSSFSMIRGTRGYMAPEWVLNLAITSKVDVYSYGIVLLEMITGKSPTTVVQNIDGEDSYNGRLVTWVREKRSGTCWLEHIIDPAIKTNYDECKMDLLAKVALDCVEEDKDIRPTMSQVVEMLQRHESDPQ 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1374 466 Gene3D Transferase(Phosphotransferase) domain 1 260 466 - -
Ssu3g1374 466 CDD STKc_IRAK 191 460 - -
Ssu3g1374 466 PANTHER SERINE/THREONINE KINASE, PLANT-TYPE PROTEIN 92 463 - -
Ssu3g1374 466 ProSiteProfiles Protein kinase domain profile. 185 464 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g1374 466 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 1 92 - -
Ssu3g1374 466 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 92 463 - -
Ssu3g1374 466 SMART serkin_6 185 458 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g1374 466 Gene3D Phosphorylase Kinase; domain 1 151 259 - -
Ssu3g1374 466 Pfam Protein kinase domain 188 456 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g1374 466 Gene3D - 3 96 IPR036426 -
Ssu3g1374 466 PANTHER SERINE/THREONINE KINASE, PLANT-TYPE PROTEIN 1 92 - -
Ssu3g1374 466 ProSitePatterns Serine/Threonine protein kinases active-site signature. 301 313 IPR008271 GO:0004672|GO:0006468
Ssu3g1374 466 SUPERFAMILY Protein kinase-like (PK-like) 164 459 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1374 Ssu-Chr3 34696206 34699056 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g1374 140 458 Trihelix Transcription Factor Family AT5G38560 38.855 2.48e-66 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Ssu3g1374 Pkinase 2.9e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1374 - - gmx:100784287 656.751