Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1361 ATGGCACTAAATAAGACAGGAAACTTGTTAGGTACCAACACTATTAAGGACCCTAGCGTGTTTCCTCAACACGCTCAACCAGAATTATCCAGTGGTGTTTCAAATACAGGACGTCATGTACATAATAATATTGCTATACTGGCAGGGGAAGGATTTTCTGTGAATGTTGGTCTTGATGGAATTGCTGCTGGAAGGGTTCCTGTTTCACCTGATATAGCTCGAAATCGTGAGAATGCTTTTGGGTTGAATAGGGAAAATGGCCATGTGAGGTACAAAGATCTTACTAATATTTTGGGGTTGAAGAGAATGGACTCTGAGAGTTCTTCTGACGTATCTGACTTTGTACCTATAAAACAGCCAGCACAGGAGATGGAAAATGGAGCTTCTGTAAACATTTTAAGCAAAGTTCAAAAGGGAGATGGTGTGTTGAGGAAGGCTGTTCATGACCCAATTGGTGATCAGTCTGGTCTTATGGCGGCTGTATCACCCATTCGCAGATATGAAGCTTCTCAGTCCAATGGATTTTCTGGTTCAGTAATTTTAGATGATTCTCTGTCTGGTGGGAAAATAAAGTTTCTATGCAGCTTTGGTGGAAAAATATTACCGAGGCCCAGTGATGGGAAACTCAGATATGTAGGGGGAGAGACCCACATTATTTCTATCCGGAAGGATATTTCTTGGGAAGAGCTTATGAAGAAGACCTTGGGTATTTGCAATCAACAGCACACAATCAAGTATCAGCTGCCAGGGGAGGATCTTGATGCTTTAATATCTGTTTCCTCTGATGAAGATCTACAAAATATGAAAGAGGAATACCATGGGCTTGAGAGGCATGAAGGTTCTcaaaaacttagaatttttttagttcctttGGGTGAATCTGAAGAGACATCATCAACAGAGGTGAGTGCTGTTCAGCAGAGTGATCCTGATTACCAATATGTTGTCGCCGTAAATGGCATGGGAGACCCTACTAGGACAAACATTAGTGGGCAAAGTTTGATAAACGAATCCAGTCAGTTGGCGATAGATTTGAATTTTACTCCAGTTTTTCCAAAAGCTCCAAATGCCTCTTCTCCTTTGGAGATCAGGGATGGTATTAATGCTTTAAATCCAGATGGAATTTTGAATGATTCCGTGAATTTGCAAAGACCCTTGCCAATTCCTACGACTCCAATTCAGGTAACAAGTTCTAGCACAGGTTATATACAGTTGCTTGGTAACAACTCATGCCAGGGAAGTATTGAGAGCAGTGCATCATTTACTACTGCTCAGCGGCATCCTGAGTACTCCAACATCGGCACTGCTGATTGCAGATACCCTCAACAAGTGACTGCTACTTTGTCAAGCGACACTCATCCTTATCAGCATGGTGATGTTGGTCAGCCCAAGAAGCTCAATGGGGGGCATTTGGACTACAATCCTGGCAAGGAATTAGTGACTCCTGTGTATGTTAATCCAAGTGACGGTTACAATGATGAAGTTTTTGGTGAAAGGTCCTTGCAAAGGGAAAGAAGAGTCTACTCTGGGAATCCTCTTTCATGCTTGGATGATCCAATCTATCAACAGAATGAATCTTATGGAGTTACTGACTCCCCTCATGGGATACCCCATGCATTTTCTGATCCACAGTTGCACGAGAGTGGAGCAAGGTCTGGCTACTGCTCACAAAATGGATTTGGTCAATCTTTCTCCCTGAACCTTGAAAAGGGTCAATTATGTTCAATGTTACTGCCTAGTGTCTCACAAGTGAACCTTATGGAGCATCAGCATGATTCCATTGTCCATCATCCTCAAATACAAATTAAGATACCAAAAGTTGAGTCAGCTGAGCTGCACAAAAGGCAAGATTTGGCATCTTCTTCTCCATACTATGAATCATTGGGAATGAATGATCCTGTTCATACAGATAGCATTTTAACTGAAAAAAAGAACCTTATTGCTCAAACTGACTTGAGTGGACCCAGCTATGTTGCAAAGGATATTCAGGAAAATTCTGTGAAATTAGAAAGGATGAAGATAATTGAAGAAAAGAATCCAATTCCAAAGGATAGCAAGGTTCATGAGGGGAAATCAACTGTCATGGATATGGGGCATGGGACTGAATTGCATCTTTTGGACTCCTTCCCTGTTAATAACTTCAATGCTAATATTAATATGCTAAAGAATTGGGAGCTACCTTCTAGGGGTATAGTTCCTGCTCCATCAGGCATGATGGGCCTCTCTCTAAATAACATTGTGGAAAAGACCCCGTCTGATCTTGACATTAGCCAAAGGACTAGTGATCACAAAAAATATGCTTTGGCTGAAGGTCTGAATGGTGAACAAGGGATTGATTTTTCATTGACcagaaattttgatttaaatgcTCCAATTCTAAATTGTGAAGTAGGCTCTTGCGGCAAAAGTTCTCAAGGAGATCATAAGTTCAAGCTATCCATTCACCCGGATTCTCTTAAAGCTGCACAGATTCATTCTTCTAAGAATCAGATGGCTACAGGTTTTCAAGAAAATCCAACAGTAAGCTCTGCAATTTTGTATCCTGCTGCATTTGATCTCGGCCCAAGTCTAAACATGCCTATGAATGGCCTGGATAATTCAAGCAATATCATGTCTTTTAAAAAGGCACCATCTTTTCTTGATGACTTGATTACCAGCACTGGTCAAATGGTTAATCAGTTTATCCCTGAACACTCTGCCTCTGGAATGgcaaaaattgaagataaaatttCAGAACAATCAGAAAATTTGGAAAGGTGTAATGATGCAAATCGAGTGCAGCCGTTTGTCATAGTAGAAGACATGACTGGTGCTGTTCATCCATATATTTTGAATGATGTTGGGAGTGTTGTTGTATCCCCATCTCACATGGAAGCTGAGAGCATCATCCCTGAGTCTGAACCTGAGgATTTTAATGACGATCGAACAGACAAAAATGAATTCCTTTCTGATGCAATGATAGCAGAAGTGGAAGCTAGCATTTATGGTTTACAGATAATAAGGAATGCTGATCTTGAAGAACTTGTGGAGTTAGGATCTGGTACTTACGGAACTGTTTATCATGGAAAATGGCGGGGAACAGATGTTGCtataaagagaattaaaaagaGTTGTTTTGCAGGGAGGTCTTCTGAGCAAGAACGATTGGCAAAAGATTTCTGGAGAGAGGCACAGATCCTCTCAAATCTTCACCATCCCAATGTGGTTGCATTTTATGGAATAGTACCGGATGGGGCTGGTGGAACCTTAGCAACTGTAGCAGAGTATATGGTTAATGGTTCCCTTAGGCATGTCCTTGTAAAGAACAACAGACTACTAGATCGTCGTAAAAAGCTAATAATTGCCATGGATGCAGCTTTTGGTATGGAATATTTGCACTCAAAAACATTGTCCATTTTGATTTGA 3405 0.4023 MALNKTGNLLGTNTIKDPSVFPQHAQPELSSGVSNTGRHVHNNIAILAGEGFSVNVGLDGIAAGRVPVSPDIARNRENAFGLNRENGHVRYKDLTNILGLKRMDSESSSDVSDFVPIKQPAQEMENGASVNILSKVQKGDGVLRKAVHDPIGDQSGLMAAVSPIRRYEASQSNGFSGSVILDDSLSGGKIKFLCSFGGKILPRPSDGKLRYVGGETHIISIRKDISWEELMKKTLGICNQQHTIKYQLPGEDLDALISVSSDEDLQNMKEEYHGLERHEGSQKLRIFLVPLGESEETSSTEVSAVQQSDPDYQYVVAVNGMGDPTRTNISGQSLINESSQLAIDLNFTPVFPKAPNASSPLEIRDGINALNPDGILNDSVNLQRPLPIPTTPIQVTSSSTGYIQLLGNNSCQGSIESSASFTTAQRHPEYSNIGTADCRYPQQVTATLSSDTHPYQHGDVGQPKKLNGGHLDYNPGKELVTPVYVNPSDGYNDEVFGERSLQRERRVYSGNPLSCLDDPIYQQNESYGVTDSPHGIPHAFSDPQLHESGARSGYCSQNGFGQSFSLNLEKGQLCSMLLPSVSQVNLMEHQHDSIVHHPQIQIKIPKVESAELHKRQDLASSSPYYESLGMNDPVHTDSILTEKKNLIAQTDLSGPSYVAKDIQENSVKLERMKIIEEKNPIPKDSKVHEGKSTVMDMGHGTELHLLDSFPVNNFNANINMLKNWELPSRGIVPAPSGMMGLSLNNIVEKTPSDLDISQRTSDHKKYALAEGLNGEQGIDFSLTRNFDLNAPILNCEVGSCGKSSQGDHKFKLSIHPDSLKAAQIHSSKNQMATGFQENPTVSSAILYPAAFDLGPSLNMPMNGLDNSSNIMSFKKAPSFLDDLITSTGQMVNQFIPEHSASGMAKIEDKISEQSENLERCNDANRVQPFVIVEDMTGAVHPYILNDVGSVVVSPSHMEAESIIPESEPEDFNDDRTDKNEFLSDAMIAEVEASIYGLQIIRNADLEELVELGSGTYGTVYHGKWRGTDVAIKRIKKSCFAGRSSEQERLAKDFWREAQILSNLHHPNVVAFYGIVPDGAGGTLATVAEYMVNGSLRHVLVKNNRLLDRRKKLIIAMDAAFGMEYLHSKTLSILI 1134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1361 1134 ProSitePatterns Protein kinases ATP-binding region signature. 1011 1036 IPR017441 GO:0005524
Ssu3g1361 1134 ProSiteProfiles Protein kinase domain profile. 1005 1134 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g1361 1134 Pfam PB1 domain 206 290 IPR000270 GO:0005515
Ssu3g1361 1134 Gene3D Transferase(Phosphotransferase) domain 1 986 1133 - -
Ssu3g1361 1134 PANTHER KINASE SUPERFAMILY WITH OCTICOSAPEPTIDE/PHOX/BEM1P DOMAIN-CONTAINING PROTEIN 112 1128 - -
Ssu3g1361 1134 SUPERFAMILY CAD & PB1 domains 205 295 - -
Ssu3g1361 1134 Pfam Protein tyrosine and serine/threonine kinase 1009 1129 IPR001245 GO:0004672|GO:0006468
Ssu3g1361 1134 Coils Coil 903 923 - -
Ssu3g1361 1134 PANTHER SERINE-THREONINE PROTEIN KINASE 112 1128 - -
Ssu3g1361 1134 MobiDBLite consensus disorder prediction 14 34 - -
Ssu3g1361 1134 SMART PB1_new 204 291 IPR000270 GO:0005515
Ssu3g1361 1134 Gene3D - 208 290 - -
Ssu3g1361 1134 SUPERFAMILY Protein kinase-like (PK-like) 993 1127 IPR011009 -
Ssu3g1361 1134 CDD PB1_UP2 193 288 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1361 Ssu-Chr3 34207519 34212193 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g1361 48 323 MAP Kinase Kinase Kinase AT1G04700 40.351 4.81e-44 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-6 Ssu3g1361 PK_Tyr_Ser-Thr 3.4e-21 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1361 - - gmx:100790135 1873.6