Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1360 ATGGAAGACGAGGAAATGGTAACCAAAGTTGGAGAAAGCCTAAAAGAAGATTCATCAAGAGTTTTTCCATGCCTATTCTGTTCAAGAAAGTTTTACAGTTCTCAAGCTTTAGGAGGACACCAAAATGCtcacaagaaagaaagaacagcTGCAAGGAAGGCCAAGAGGGCTTCTGAGTACTCATGTGTATCTTTCGCTTCCCCACTCCCAACCCCGATGGTTTTTGCTCCAACCCATCTAGACATTTTAAATCCTTCAATGTTCATCACTGCCCATGCAACAAAACTCCCTTATCTACCAAGCCATCAAATTTCAGAACAATTTGGATCAAATGGTGCACCCAGATTTAGCAATGCTCTGTTTTATGGGGAAAGCTCAAAAAATCGATTCCATGATGATGCGAATAGCTATAACTTTGGCTGGGGTGACACATCTCAACATATACCATTGATAAGTAACAATCAAAATCTTGGAATTTGGAATAATGGTACAGAGAAAGATCAGAAGCTTGATTTATCTCTCCATTTGTAG 531 0.3823 MEDEEMVTKVGESLKEDSSRVFPCLFCSRKFYSSQALGGHQNAHKKERTAARKAKRASEYSCVSFASPLPTPMVFAPTHLDILNPSMFITAHATKLPYLPSHQISEQFGSNGAPRFSNALFYGESSKNRFHDDANSYNFGWGDTSQHIPLISNNQNLGIWNNGTEKDQKLDLSLHL 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1360 176 Gene3D Classic Zinc Finger 3 67 - -
Ssu3g1360 176 ProSiteProfiles Zinc finger C2H2 type domain profile. 22 49 IPR013087 -
Ssu3g1360 176 SUPERFAMILY beta-beta-alpha zinc fingers 19 49 IPR036236 -
Ssu3g1360 176 PANTHER ZINC FINGER PROTEIN JAGGED 15 176 IPR045320 GO:0003700
Ssu3g1360 176 ProSitePatterns Zinc finger C2H2 type domain signature. 24 44 IPR013087 -
Ssu3g1360 176 PANTHER PROTEIN LATE FLOWERING 15 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1360 Ssu-Chr3 34171819 34172349 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g1360 1 176 C2H2 Transcription Factor Family AT5G48890 37.895 4.45e-17 72.8