Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1359 ATGGTGGTCATTGAGCAGGAAGAGAGCAAGCATCGAAACGCCAACGCCTCCATCGCCGGCGCCAGTAACGACGCTTCCGACGGCTTCGAAACCGCCAGCGACGCCGATCTCGACAGTGACGGCGACGACGGCGGAGCCTGCAGCCGCGAAGCACAGAACCACCCCGGGAAACCCCACCAGCAGCAGACAGAGCAAGAGCCGGAACACGATGGTCCTCGGAGCACCGAATCCTCGGAGAATGCCTTGATCAATGAAGAAGAATCGAGACAGAAAGCATTGGATCAAGCAAATGAAGCAAAGGTAGAAGGGAACAAGCTTTTTGTAGATGGGAAGTATGAAGAGGCGTTATCACAATATGAACTTGCTTTACAAGTGGCACCAGACGTGCCTTTGTCTGTGGAAATACGTTCAATATGCCATTCGAACCGTGGTGTGTGCTTTTTGAAATTGGGAAAATATGAGAACACAATTAAAGAATGCACAAAAGCATTAGAACTGAATCCTGTATACGTTAAAGCTTTGGTAAGAAGAGGAGAAGCTCATGAAAAGCTTGAGCATTTTGAAGAGGCCGTTGCTGATATGAAAAAGATCTTAGAAATTGATCCCTCAAATGATCAAGCTGGGAAAACCATTCGGCGACTAGAGCCCCTTGCTGCAGAAAAACGGGAAAAGATGAAGGAGGAAATGATTGCAAAACTGAAAGAAATGGGCAATTCTGTCTTGGGTCGCTTTGGGATGAGCGTAGACAACTTTAAAGCAGTCAAAGATCCAAACACTGGTTCCTATTCTGTCTCATTCCAACGCTAA 807 0.4734 MVVIEQEESKHRNANASIAGASNDASDGFETASDADLDSDGDDGGACSREAQNHPGKPHQQQTEQEPEHDGPRSTESSENALINEEESRQKALDQANEAKVEGNKLFVDGKYEEALSQYELALQVAPDVPLSVEIRSICHSNRGVCFLKLGKYENTIKECTKALELNPVYVKALVRRGEAHEKLEHFEEAVADMKKILEIDPSNDQAGKTIRRLEPLAAEKREKMKEEMIAKLKEMGNSVLGRFGMSVDNFKAVKDPNTGSYSVSFQR 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1359 268 ProSiteProfiles TPR repeat profile. 137 170 IPR019734 GO:0005515
Ssu3g1359 268 SUPERFAMILY TPR-like 92 210 IPR011990 GO:0005515
Ssu3g1359 268 Coils Coil 4 24 - -
Ssu3g1359 268 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 1 50 268 - -
Ssu3g1359 268 Gene3D Tetratricopeptide repeat domain 56 235 IPR011990 GO:0005515
Ssu3g1359 268 ProSiteProfiles TPR repeat profile. 96 129 IPR019734 GO:0005515
Ssu3g1359 268 Pfam Tetratricopeptide repeat 172 204 IPR013105 -
Ssu3g1359 268 Pfam Tetratricopeptide repeat 139 168 IPR001440 GO:0005515
Ssu3g1359 268 MobiDBLite consensus disorder prediction 61 81 - -
Ssu3g1359 268 ProSiteProfiles TPR repeat profile. 171 204 IPR019734 GO:0005515
Ssu3g1359 268 SMART tpr_5 96 129 IPR019734 GO:0005515
Ssu3g1359 268 SMART tpr_5 137 170 IPR019734 GO:0005515
Ssu3g1359 268 SMART tpr_5 171 204 IPR019734 GO:0005515
Ssu3g1359 268 Coils Coil 82 102 - -
Ssu3g1359 268 MobiDBLite consensus disorder prediction 1 81 - -
Ssu3g1359 268 MobiDBLite consensus disorder prediction 13 29 - -
Ssu3g1359 268 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 1 50 268 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1359 Ssu-Chr3 34165773 34170244 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g1359 62 227 Calmodulin-binding Proteins AT3G25230 34.807 2.89e-17 79.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1359 K24926 - gmx:100808386 418.698