Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1356 ATGTGGGACCGGGAATCCCGTGGACGACTGCTGGCGGTGCGACAAGCGGTGGTACCTCCGGCGAAAGAGTTTGGCCAACTGCGGCATCGGATTCGGCCGCAACGCCATTGGCGGGCGCGACGGGCGGTACTACGTGGTCTCCGACCCGAGCGACGAGGACCCGGTGAACCCGAAACCGGGGACGCTCCGGCACGCCGTGATCCAGGACCGTCCCCTGTGGATCGTGTTCAAGCGGGACATGGTGATCACCCTGAAGCAGGAGCTCATCATGAACAGCTTCAAGACCATCGACGGCGCGGCGCCAACGTCCACATCGCCTACGGCGCCTGCATCACCATCCAGTTCATAACCAACGTCATCATCCACGGCCTCCACATCCACGACTGCAAGCAGACCGGGAACGCCATGGTTCGCAGCTCCCCCTCCCACTACGGTTGGAGGACCCTCGCTGATGGGGACGGTGTTTCCATCTTTGGCTCCAGTCACATTTGGATTGACCATAATTCGTTATCCAATTGCGCTGATGGCCTTATTGACGCCATCATGGGGTCCACTTCCATTACCatttccaacaacttcttcacCCACCACAACGAGGTTATGCTACTGGGTCACAGTGACTCTTATGTCCGCGACAAGCAGATGCAAGTAACCATTGCTTACAACCATTTTGGGGAGGGTCTTATCCAAAGAATGCCCAGATGCAGACATGGGTATTTCCACGTGGTTAACAATGACTACACCCACTGGGAAATGTATGCAATTGGCGGCAGTGCTGACCCCACAATTAACAGCCAGGGCAACAGATACCTTGCTCCTCAGAACCCTTTTGCTAAAGAGGTGACAAAGAGAGTGGATACAGGGGAATCCATGTGGAAAAGTTGGAATTGGAGGTCTGAGGGAGACCTTATGCTCAATGGAGCCTTTTTCACTTTGTCAGGAGCAGGAGCTGCAGCAAGCTATGCTAGAGCCTcaagtttgggggccaaatcaTCTTCTTTGGTTGGTACCATCACCTCTGGAGCTGGTGTTCTTAACTGTCGCAGGGGTGTCATGTGTTAA 1062 0.5311 MWDRESRGRLLAVRQAVVPPAKEFGQLRHRIRPQRHWRARRAVLRGLRPERRGPGEPETGDAPARRDPGPSPVDRVQAGHGDHPEAGAHHEQLQDHRRRGANVHIAYGACITIQFITNVIIHGLHIHDCKQTGNAMVRSSPSHYGWRTLADGDGVSIFGSSHIWIDHNSLSNCADGLIDAIMGSTSITISNNFFTHHNEVMLLGHSDSYVRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSADPTINSQGNRYLAPQNPFAKEVTKRVDTGESMWKSWNWRSEGDLMLNGAFFTLSGAGAAASYARASSLGAKSSSLVGTITSGAGVLNCRRGVMC 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1356 353 PANTHER OS04G0137100 PROTEIN 98 350 - -
Ssu3g1356 353 SUPERFAMILY Pectin lyase-like 99 348 IPR011050 -
Ssu3g1356 353 MobiDBLite consensus disorder prediction 43 63 - -
Ssu3g1356 353 PANTHER PECTATE LYASE 18-RELATED 98 350 IPR045032 GO:0030570
Ssu3g1356 353 Pfam Pectate lyase 108 268 IPR002022 -
Ssu3g1356 353 Gene3D - 97 346 IPR012334 -
Ssu3g1356 353 PRINTS Pollen allergen Amb family signature 151 172 IPR018082 -
Ssu3g1356 353 PRINTS Pollen allergen Amb family signature 295 319 IPR018082 -
Ssu3g1356 353 PRINTS Pollen allergen Amb family signature 324 347 IPR018082 -
Ssu3g1356 353 PRINTS Pollen allergen Amb family signature 253 272 IPR018082 -
Ssu3g1356 353 PRINTS Pollen allergen Amb family signature 231 250 IPR018082 -
Ssu3g1356 353 SMART amb_all 80 276 IPR002022 -
Ssu3g1356 353 MobiDBLite consensus disorder prediction 78 97 - -
Ssu3g1356 353 MobiDBLite consensus disorder prediction 43 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1356 Ssu-Chr3 34038296 34040733 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g1356 99 353 Polysaccharide Lyase AT4G13710 83.922 2.24e-160 455
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1356 K01728 - gmx:100809277 500.745