Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1354 ATGAGATTAATGATCTTGTGTCTAGGTTACAGAGTTCTTCTTCCGCAAGTGAACCAAAGAGGCAACTCCAGGAACGCTGACAAGAAGTGTCTGTGTTTTGGTGGGCAGCAATCAGCGTCCGAGATCTTGCAGGAAACCTGTTGTCACATTAGGAGGCTGCAGAAAGAGGTGGAACAGCTCAGTGAGAGGCTATCAGAGTTGATGGATTCTGTGGATATCAGTGACATTGACAGAAGAACTTTACAAAACTTTTTGCAACAATAA 264 0.4394 MRLMILCLGYRVLLPQVNQRGNSRNADKKCLCFGGQQSASEILQETCCHIRRLQKEVEQLSERLSELMDSVDISDIDRRTLQNFLQQ 87
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1354 87 PANTHER DNA BINDING PROTEIN 35 87 IPR044172 -
Ssu3g1354 87 PANTHER DNA BINDING PROTEIN 35 87 - -
Ssu3g1354 87 Coils Coil 43 70 - -
Ssu3g1354 87 Gene3D - 9 83 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1354 Ssu-Chr3 33972266 33973982 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g1354 6 72 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G39860 47.761 8.82e-12 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1354 - - gmx:100810266 74.3294