Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1351 ATGGCGTTTCTGAAGCCTTTCTCTCTCCACATTTCCATGtccttgttcttcttcttcctcttcttttgcTTCTGCAAAGCCAGTACCACCACAAAGTCATTGCCCCCTTCACCATCCACTTCCTCTGATGTTGAACTTCTCTTGGGAAAAATCAAAGCTTCTCTGCAAGGTAACACTGACAACCTTGTTTTGTCTTCATGGAACTCCTCTATCCCACTTTGCCAGTGGAGAGGCCTCAAATGGGTGTTCTCCAATGGCACTCCTCTCTCATGCACTGACTTGTCCTCACCACAATGGACCAATCTTTCACTCCACAAGGACCCTTCTCTTCACTTGCTTTCTCTTCAGCTCCCATCTGCCAACCTCTCTGGTTCACTCCCCAGCGAGCTTGGGGAGTTCCCTATGCTTCAAAGTCTCTACCTTAACATAAATTCATTGAAGGGAACCATCCCTCTTGAGCTTGGCTATGGCACATCCCTCTCTGACATTGATTTGGGTGACAATATGCTAAGTGGGGTTCTCCCCCCATCCATTTGGATCTTGTGTGACAGGCTTGTTTCCCTTAGGCTCCATGGTAATTCACTATCTGGGTCTGTTTCTGAGCCAGCATTGCCTAACTCATCTTGCAAGAATTTGCAGTTGCTTGATTTGGGTGGCAACAAGTTTTCTGGGAGTTTCCCGGAGTTCATCACAAAGTTTGGTGGGCTAAAGCAGCTTGACTTGGGGAACAATATGTTCACGGGTACAATTCCTCAAAGCCTAGTTGGGTTAAGGCTTGAAAAATTGAATCTTTCCCACAATAATTTTAGTGGGGTGTTGCCCTTCTTTGGAGAATCCAAGTTCGGTGTGGATGCTTTTGAAGGGAATAGCCCTGGCCTGTGTGGACCACCTTTGGCAAGCTGTGCTAGGACCTCTACACTGAGTTCTGGTGCAGTTGCTGGCATTGTTATTAGTTTGATGACAGGAGCTGTGGTTTTGGCTTCTTTGCTGATTGGGTATACGCAGAACAAGAAGAGGAAGGGGAGTGGAGAGAGTGAGGATGAGTTGAATGATGAGGAGGAAGATGAAGAGAATGGTGGCAATGCTATTGGTGGAGCTGGTGAGGGGAAGCTCATGTTGTTCCCTGGAGGTGAGAGTTTGACATTGGATGATGTGTTGAATGCAACTGGGCAAGTTTTGGAGAAGACTTGTTATGGGACAGCTTATAAGGCAAAGCTTGCTCATGGAGGCTCCATTGCTTTGAGGTTGTTGAGAGAAGGTAGCTGCAAAGATAGGCCTTCATGCTTGTCAGTTATAAAGCAATTGGGAAAAATTAGCCACGAGAATTTGATTCCTTTGAGAGCTTTCTATCAGGGGAAGAGAGGGGAGAAGCTCCTTATTTATGACTTCCTGCCTTTCAGAACACTTCATGATCTTTTACATGAACCTAAAGCTGGAAAACCAGTGCTGAACTGGGCTAGGCGACACAAGATTGCGTTGGGTATAGCAAGAGGGCTAGCTTATCTTCATACAATACCTGAAGCTCCTGTAACTCATGCAAATGTAAGATCCAAGAATGTGCTTGTGGATGACTTCTTTGCAGCCAGGCTCACTGATTACGGCCTCTACAAGCTGATGATTCCTTCCATAGCCGATGAAATGGTGGCGCTTGCCAAGACCGACGGCTACAAGGCTCCCGAGCTTCAAAGAATGAAGAAGTGTAACTCCAGGACTGATGTTTATGCATTTGGTATATTGCTGCTTGAAATCTTGATTGGGAAGAAGCCTGGGAAGCATGGAAGAAGTGGTGAGTATGTAGATTTGCCTTCAATGGTGAAAGTGGCAGTTTTGGAGGAGACAACAATGGAAGTGTTTGATGTGGAACTTTTGAAAGGGATAAGAAGTCCAATGGAAGATGGGTTGGTGCAGGCACTGAAGCTGGCAATGGGGTGCTGTGCACCAGTGGCATCTGTTAGGCCAAGCATGGATGAAGTTGTGAGGCAGTTGGAGGAGAATAGACCAAGGAATAGGTCTGCATTATACAGCCCTACAGAAACAAGAAGTGGAAGTGTTACCCCATTTTGA 2064 0.4564 MAFLKPFSLHISMSLFFFFLFFCFCKASTTTKSLPPSPSTSSDVELLLGKIKASLQGNTDNLVLSSWNSSIPLCQWRGLKWVFSNGTPLSCTDLSSPQWTNLSLHKDPSLHLLSLQLPSANLSGSLPSELGEFPMLQSLYLNINSLKGTIPLELGYGTSLSDIDLGDNMLSGVLPPSIWILCDRLVSLRLHGNSLSGSVSEPALPNSSCKNLQLLDLGGNKFSGSFPEFITKFGGLKQLDLGNNMFTGTIPQSLVGLRLEKLNLSHNNFSGVLPFFGESKFGVDAFEGNSPGLCGPPLASCARTSTLSSGAVAGIVISLMTGAVVLASLLIGYTQNKKRKGSGESEDELNDEEEDEENGGNAIGGAGEGKLMLFPGGESLTLDDVLNATGQVLEKTCYGTAYKAKLAHGGSIALRLLREGSCKDRPSCLSVIKQLGKISHENLIPLRAFYQGKRGEKLLIYDFLPFRTLHDLLHEPKAGKPVLNWARRHKIALGIARGLAYLHTIPEAPVTHANVRSKNVLVDDFFAARLTDYGLYKLMIPSIADEMVALAKTDGYKAPELQRMKKCNSRTDVYAFGILLLEILIGKKPGKHGRSGEYVDLPSMVKVAVLEETTMEVFDVELLKGIRSPMEDGLVQALKLAMGCCAPVASVRPSMDEVVRQLEENRPRNRSALYSPTETRSGSVTPF 687
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1351 687 MobiDBLite consensus disorder prediction 668 687 - -
Ssu3g1351 687 ProSiteProfiles Protein kinase domain profile. 387 687 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g1351 687 Gene3D Phosphorylase Kinase; domain 1 377 463 - -
Ssu3g1351 687 MobiDBLite consensus disorder prediction 338 366 - -
Ssu3g1351 687 Pfam Protein tyrosine and serine/threonine kinase 391 662 IPR001245 GO:0004672|GO:0006468
Ssu3g1351 687 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 14 687 - -
Ssu3g1351 687 Gene3D Transferase(Phosphotransferase) domain 1 466 679 - -
Ssu3g1351 687 PANTHER KINASE-LIKE PROTEIN TMKL1-RELATED 14 687 - -
Ssu3g1351 687 Gene3D Ribonuclease Inhibitor 42 206 IPR032675 -
Ssu3g1351 687 Pfam Leucine rich repeat 211 269 IPR001611 GO:0005515
Ssu3g1351 687 SUPERFAMILY L domain-like 78 275 - -
Ssu3g1351 687 SUPERFAMILY Protein kinase-like (PK-like) 391 663 IPR011009 -
Ssu3g1351 687 MobiDBLite consensus disorder prediction 666 687 - -
Ssu3g1351 687 Gene3D Ribonuclease Inhibitor 208 305 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1351 Ssu-Chr3 33830710 33833449 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g1351 13 687 Receptor kinase-like Gene Family AT3G24660 72.485 0.0 922
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Ssu3g1351 PK_Tyr_Ser-Thr 5.1e-24 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1351 - - gmx:100814814 1142.49