Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1349 ATGCTTATGGTTGAGTTTTTGAGGGAATTGCCAATGTCAATGCCGAGGCAAGCCTTGAGCAACCAAAACCACAACCAAATGTCGAGGCAAGCTTTCATCACAAAccgtcaccatcaccatcaactGCACCAACTTCACCATGTTCTTCTCTTTACACTTCTTGTTCCTCTTTCCTTTGCTGCAAATGATGAAGTTAGTGCATTGGTTTCATGGATGCATAGCTCCTCCAAAGTTCCTTCAGCCTTTTCTAATTGGAACCCTTTGGACTCCAATCCTTGCAAATGGTCTTACATCAAGTGCTCTTCAGCAAGCCTTGTCACTGAGATAACCATTCAAAATGTTGGGTTAGCCCTTCCCTTCCCTTCAAAAATCTCTTCCCTTCCCTTCCTTCAAAGGCTAGTCATTTCTGGGGCTAACCTAACTGGGGCTATCTCACCTGACATTGGGAACTGCCCTGAGCTTATAGTCCTTGACCTTAGCTCAAATAGTCTTGTGGGTGGAATACCTTCAAGTATTGGGAGGCTTAAAAACCTCCAAAACTTGAGCTTGAACTCTAACCATCTCACTGGGCCAATCCCAAGGGAGTTTGGTGATTGTGTCAATCTCAAGAACCTTGACATCTTTGATAACAACCTTAGTGGGGATGTTCCTGTGGAGCTGGGAAAGCTGTCAAATCTGGAGGTTATAAGAGCAGGAGGGAACAATGGCATTGTGGGGAAGATTCCAGATGAGCTAGGGGATTGCAGGAATTTGACAGTGTTGGGTCTTGCAGACACTAAAATTTCTGGTTCATTGCCAGCTTCACTGGGTAAGCTAAGCATGCTTCAGACCTTGTCTATTTATAGTACTATGCTCTCTGGTGAGATTCCTCCTGAAATAGGGAACTGCTCAGAGCTTGTGAACTTGTTTTTGTATGAGAATGATCTCTCTGGCTTCCTGCCAAGAGAGCTTGGTAAGCTTCAGAAGCTGGAAAAGATGCTGCTGTGGCAAAACAATTTTGCTGGGGGCATTCCTGAGGAAATTGGCAACTGCAGAAGCCTGAAGATTCTTGACTTCTCCTTAAATTCTTTCTCTGGTGGAATACCTCAAAGTTTGGGGCAGCTCTCAAATCTTGAAGAGCTTATGCTGAGTAACAATAACATCTCTGGTTCAATACCACCAGCTCTTTCCAATCTCACAAACCTCATACAGTTGCAGTTGGATACAAATCAGCTATCAGGTTCGATTCCACCTGAGCTTGGAAGCTTGACAAAGCTAACAGTCTTTTTTGCTTGGCAGAACAAACTTGAAGGTGGCATTCCATCAGCATTGGGAGGTTGTAGCAGCCTGGAGGCTTTGGATTTGTCATACAATGCACTCACTGATAGCTTACCCCCAGGCTTGTTTAAGcttcaaaatttaacaaagcTTCTACTTATCTCTAATGATATTTCTGGTCCCATCCCTTCTGAGATTGGCAACTGCAGTTCCCTCATTCGCCTCCGGCTTGTCGACAACAGAATCAGTGGGGAGATACCAAGAGAAATTAGTTTCCTAAATAGGCTCAACTTCCTTGATCTGTCTGAAAATCAGCTTACTGGGTCAGTACCAATTGAGATTGGAAACTGTAAAGAACTGCAAATGCTGAATCTCAGCAATAACTCCCTTTCTGGTGCTTTGCCTAGTTATTTGTCTTCTCTCACAAGGCTAGAAGTCTTGGATGTTTCTATGAATAACTTTTCTGGCGAGGTTCCAATGAGCATTGGCCAACTCACTTCACTTCTTAGAGTGATCCTAAGCAAAAACTCTTTCTCTGGACCAATACCCTCCTCACTTGGGCAATGTTCAGGTCTTCAACTGCTAGACCTTAGCAGCAACAAGTTCTCAGGGAACATCCCACCAGAACTGCTTCAAATTGAAGCACTTGATATTTCTCTCAATTTGAGTCACAATGTTTTATCTGGAGTAATCCCACCAGAGATTTCTTCTCTGAACAAGCTGTCAGTTCTAGACCTTTCACACAACAATCTTGAAGGTGAATTGATGGCATTTTCGGGGCTCGAAAATCTTGTTTCTCTGAACATTTCCTACAACAAGTTCACTGGTTATCTACCGGATAGCAAGTTATTCCACCAACTATCAGCAACAGATTTTGCCGGAAACCAAGGTTTGTGTCCTGATGGTCGTGATTCATGTTTTGTTAGCAATGCTGCAATGACAAAAATGCTGAATGGAACTAATTCTAAGAGGTCAGAGATAATCAAACTGGCCATTGGATTGCTCAGTGCCTTGACTGTTGCAATGGCAATCTTCGGAGTTGTTATGATCTTTCGAGCAAGGAAAATGATTCAAGCAGATAATGATTCTGAGATGGGAGGGGATTCATGGCCTTGGCAGTTCATCCCATTCCAAAAGGTAAACTTCTCTGTGGAGCAAGTTTTAAAGTGTTTGGTGGAATCCAATATGATTGGAAAGGGGTGTTCAGGGATTGTTTATCGTGCCGAAATGGAAAATGGGGATGTCATTGCTGTGAAAAGGCTATGGCCAACAACAATAGCTGCAAGATATGATAGTCAAAGTGACAAGTTAGCAGTTAATGGAGGGGTACGTGATTCCTTTTCAGCTGAGGTAAAAACTCTTGGTTCAATTCGCCACAAGAACATTGTCAGGTTCTTGGGTTGCTGTTGGAACAGACACACAAGATTGCTTATGTATGATTATATGCCAAATGGGAGTCTAGGAAGTCTACTTCATGAAAAAAGTGGCAACTGCTTGGAATGGGACATCAGATTTCGGATAATACTAGGAGCAGCTCAAGGTGTGGCTTATTTGCACCATGACTGTGCTCCTCCCATTGTTCACAGAGACATTAAGGCCAACAACATCCTCATAGGCCCTGAATTTGAACCTTACATAGCTGATTTTGGGCTTGCAAAACTTGTTGATGATGGAGATTTTGCTCGATCTTCTAGCACACTAGCTGGTTCCTATGGTTACATTGCTCCTGAGTATGGATATATGATGAAGATAACAGAGAAAAGTGATGTTTACAGCTATGGTATTGTTGTATTAGAAGTACTAACAGGGAAGCAACCAATTGATCCAACAATTCCTGATGGTCTCCACATTGTTGACTGGGTAAGACAGAAAAGAGGTGGAGTTGAAGTGCTGGATGAAAGCTTGCGAGCTCGGCCGGAATCCGAAATTGAGGAAATGTTGCAGACCTTAGGTGTGGCTTTGCTGTGTGTGAACTCAAGCCCAGATGACAGACCAACCATGAAAGATGTAGTAGCAATGATGAAGGAAATTAGGCAGGAGAGAGAGGAATGTGTGAAAGTTGACATGCTTCTTGATGCATCTTCTGCAAATGATCAACAAGAAAGAAATCATCCCAATGAGGAACCAATGTCAATGATAAGCACCAGCAGCTCAAATCTGCATCTGCATCACTCTCCCCATCGCCCTCAAACACCAAAGTAA 3459 0.4264 MLMVEFLRELPMSMPRQALSNQNHNQMSRQAFITNRHHHHQLHQLHHVLLFTLLVPLSFAANDEVSALVSWMHSSSKVPSAFSNWNPLDSNPCKWSYIKCSSASLVTEITIQNVGLALPFPSKISSLPFLQRLVISGANLTGAISPDIGNCPELIVLDLSSNSLVGGIPSSIGRLKNLQNLSLNSNHLTGPIPREFGDCVNLKNLDIFDNNLSGDVPVELGKLSNLEVIRAGGNNGIVGKIPDELGDCRNLTVLGLADTKISGSLPASLGKLSMLQTLSIYSTMLSGEIPPEIGNCSELVNLFLYENDLSGFLPRELGKLQKLEKMLLWQNNFAGGIPEEIGNCRSLKILDFSLNSFSGGIPQSLGQLSNLEELMLSNNNISGSIPPALSNLTNLIQLQLDTNQLSGSIPPELGSLTKLTVFFAWQNKLEGGIPSALGGCSSLEALDLSYNALTDSLPPGLFKLQNLTKLLLISNDISGPIPSEIGNCSSLIRLRLVDNRISGEIPREISFLNRLNFLDLSENQLTGSVPIEIGNCKELQMLNLSNNSLSGALPSYLSSLTRLEVLDVSMNNFSGEVPMSIGQLTSLLRVILSKNSFSGPIPSSLGQCSGLQLLDLSSNKFSGNIPPELLQIEALDISLNLSHNVLSGVIPPEISSLNKLSVLDLSHNNLEGELMAFSGLENLVSLNISYNKFTGYLPDSKLFHQLSATDFAGNQGLCPDGRDSCFVSNAAMTKMLNGTNSKRSEIIKLAIGLLSALTVAMAIFGVVMIFRARKMIQADNDSEMGGDSWPWQFIPFQKVNFSVEQVLKCLVESNMIGKGCSGIVYRAEMENGDVIAVKRLWPTTIAARYDSQSDKLAVNGGVRDSFSAEVKTLGSIRHKNIVRFLGCCWNRHTRLLMYDYMPNGSLGSLLHEKSGNCLEWDIRFRIILGAAQGVAYLHHDCAPPIVHRDIKANNILIGPEFEPYIADFGLAKLVDDGDFARSSSTLAGSYGYIAPEYGYMMKITEKSDVYSYGIVVLEVLTGKQPIDPTIPDGLHIVDWVRQKRGGVEVLDESLRARPESEIEEMLQTLGVALLCVNSSPDDRPTMKDVVAMMKEIRQEREECVKVDMLLDASSANDQQERNHPNEEPMSMISTSSSNLHLHHSPHRPQTPK 1152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1349 1152 SUPERFAMILY L domain-like 458 747 - -
Ssu3g1349 1152 Gene3D Ribonuclease Inhibitor 265 360 IPR032675 -
Ssu3g1349 1152 Gene3D Ribonuclease Inhibitor 361 456 IPR032675 -
Ssu3g1349 1152 Gene3D Ribonuclease Inhibitor 175 264 IPR032675 -
Ssu3g1349 1152 Gene3D Ribonuclease Inhibitor 457 552 IPR032675 -
Ssu3g1349 1152 Pfam Protein tyrosine and serine/threonine kinase 813 1091 IPR001245 GO:0004672|GO:0006468
Ssu3g1349 1152 ProSitePatterns Protein kinases ATP-binding region signature. 816 838 IPR017441 GO:0005524
Ssu3g1349 1152 SMART serkin_6 810 1093 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g1349 1152 SMART LRR_typ_2 175 199 IPR003591 -
Ssu3g1349 1152 SMART LRR_typ_2 680 705 IPR003591 -
Ssu3g1349 1152 SMART LRR_typ_2 657 679 IPR003591 -
Ssu3g1349 1152 SMART LRR_typ_2 584 608 IPR003591 -
Ssu3g1349 1152 SMART LRR_typ_2 512 536 IPR003591 -
Ssu3g1349 1152 SMART LRR_typ_2 392 416 IPR003591 -
Ssu3g1349 1152 SMART LRR_typ_2 368 391 IPR003591 -
Ssu3g1349 1152 SMART LRR_typ_2 440 464 IPR003591 -
Ssu3g1349 1152 Gene3D Ribonuclease Inhibitor 63 174 IPR032675 -
Ssu3g1349 1152 Gene3D Transferase(Phosphotransferase) domain 1 901 1118 - -
Ssu3g1349 1152 SUPERFAMILY RNI-like 234 526 - -
Ssu3g1349 1152 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE RCH1 29 1115 - -
Ssu3g1349 1152 Pfam Leucine Rich Repeat 370 392 IPR001611 GO:0005515
Ssu3g1349 1152 Gene3D Phosphorylase Kinase; domain 1 795 900 - -
Ssu3g1349 1152 SUPERFAMILY Protein kinase-like (PK-like) 794 1093 IPR011009 -
Ssu3g1349 1152 ProSiteProfiles Protein kinase domain profile. 810 1096 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g1349 1152 PRINTS Leucine-rich repeat signature 515 528 - -
Ssu3g1349 1152 PRINTS Leucine-rich repeat signature 657 670 - -
Ssu3g1349 1152 Gene3D Ribonuclease Inhibitor 553 637 IPR032675 -
Ssu3g1349 1152 Gene3D Ribonuclease Inhibitor 638 725 IPR032675 -
Ssu3g1349 1152 MobiDBLite consensus disorder prediction 1112 1152 - -
Ssu3g1349 1152 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 29 1115 - -
Ssu3g1349 1152 ProSiteProfiles Leucine-rich repeat profile. 370 393 IPR001611 GO:0005515
Ssu3g1349 1152 ProSitePatterns Serine/Threonine protein kinases active-site signature. 945 957 IPR008271 GO:0004672|GO:0006468
Ssu3g1349 1152 MobiDBLite consensus disorder prediction 1112 1144 - -
Ssu3g1349 1152 SUPERFAMILY L domain-like 81 289 - -
Ssu3g1349 1152 Pfam Leucine rich repeat N-terminal domain 61 101 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1349 Ssu-Chr3 33799160 33802994 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g1349 59 1109 Receptor kinase-like Gene Family AT5G56040 47.142 0.0 949
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Ssu3g1349 PK_Tyr_Ser-Thr 6.8e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1349 - - gmx:100794698 2064.66