Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1348 ATGGCTGTAGGCACAAAATCCGGAGGTGAGGCTGAGAAACAAGCGGCACGAGATCTTGAATTTGTTGACATGGAGTGTGAAGTGGAATTACAAGGGGGAGATCTGCATGCAGGGGTGGTAACTGAACCAAACCCTGTTGGTTTTGGGACCATGGAAGATGCACACGCTTTGGCGGTTGCAGAGAGAGAGATGTGGCTGAATAGTGACCAAGACGAGTTTCTAGGTGTCAATGACGCTTCCATGTTCTACGCTGATTTCCCTCCTCTCCCTGATTTCCCTTGcatgtcatcatcatcatcatcatcatcttcagcTCCTCCACTTCCTGTCAAAACCATCACATGTTCCACCACAACCACTACCACcacttcctcttcctcctcttcctcttcatgGGCCGTGCTAAAGTCAGATGTTGAGGAAGACGCGGAGAAAAACCATTGCAACCGCTACATGCAGCATCAACAACGGCATGACCAACTTGATGCAACAGCCTTGTCTTCCACTGCTTCAATGGAGTTTTCTCAACAGCACCACCCCGATCCTGGCCTTGGTGGCACTGTTGGAGAGTGCATGGATGATGTTATGGATACGTTCGGGTACATGGATCTTTTAGAGGCCAATGATTTCTTCGACCCCGCGTCTATCTTTCAGAATGAGGAAAACGAAAACCCTTTGGTGGAATTTGCAACACTGGAGGAACAGGTGCCACTGATAGAGGTGGAGCAACATGCAATGGTGCGTGATGAAGGGACCAAAGAGGAGGAAGATCATCGGGTTCCTGTGTGCGAAGAGATCCAAGGAGAGGAAGAAGGTGGTGATGATGGAAGTGTAGATGACGAAATGAGTAAAGTATTCTTGGAGTGGCTCAAGTTCAATAAGGACAGTGTTTCTGCTAATGACTTGAGGAATGTGAAGCTCAAGAAGGCGACGATTGAAAGCGCCGCGAGGCGGTTGGGGGGAGGAAGAGAAGCCATGAAGCAGTTGCTGAAGCTGATTCTTGAGTGGGTTCAAACCAGCCATCTTCAGAATAAACGGCGCAAGGAGAATACTGGTAACGTTAACAATGCACTTCAGGCACAGTTTCCGGATCCTAGTGGCCAGAACAACCAAACCACACACACTGGTTCATTTGCACCTGAATCAAACGCTTGCTTCAACAACCAGACACCCTGGTTGAGTCCTCAACCTTATGGGACAGATCAGGCTCCTCTCATGGTGCCTCCACAGCCATTTCCACAACCCATGGTTGGGTATGTGGGTGACCCTTACACTAGTGGTGCTGCTTCAAATAACATCACAGCCTCTCATAACCATAACAACCCTTATCAACCTGGTGCAGACCAATATCATATGTTGGAGTCAGCACATTCATGGCCCCATTCACAGTTCAATGTTGCTTCTCATTATAGCCAGTCCTTTGGGGACAATGGTCTTTTCCCACATGGGAGTTTTGGCGGCTATGGCAATAATCAGTACCCTTATCAGTTTTTTCATGGCCCTGGTGATAGGTTGATGAGGTTAGGGCCCTCGGCTACCAAGGAAGCTAGGAAGAAGAGAATGGCAAGGCAGAGAAGGTTTTTGTCTCATCATAGGCATCATAATAGTAATCACCACCAGAATCAAGGATCTGACCCTCATGCAAGATTGGGGAGTGATAATTGCACCACTGTTATGGCTGCAACTCATACAAATCCTGCGGCAAATTGGATGTACTGGCATGCTATGGCGGGCGGCGTGGCAGCTCCTTTGGCACCAGTGGTTCCTGCTGAGCCGCCGGCTGGACAACCAGCAGTGGACCGGTCAGCCATGCAGACACAGAATTGTCATCAGGGTCGAGTTGTATCAGATAGGAGACAGGGTTGGAAGCCTGAGAAGAACTTGAGGTTCCTTCTGCAAAAGGTGTTGAAGCAAAGCGATGTGGGAAGTTTGGGGAGAATAGTTTTGCCAAAAAAAGAGGCAGAAACCCATTTGCCAGAACTAGAGGCAAGAGATGGAATTTCCATAACAATGGAAGACATTGGAACTTCACGTGTTTGGAACATGCGCTATAGATACTGGCCAAACAACAAAAGCAGAATGTATTTGCTCGAGAACACTGGTGACTTTGTGAGAGCCAATGGACTCCAAGAGGGAGATTTCATAGTGATATACTCAGATGTGAAGTGTGGCAAATTTatGATAAGAGGAGTGAAAGTGAGGCAACAAGGTGTGAAACCAGAGACCAGGAAAGCAGGAAAATCGCAGAAAAACCAGCACGGGACCAATGCAGCAACTACAGCTGGTACTGCTGCTAATAATGCCACGCTGTCGTTTCCAAAGCCAAAAGCtgaaaatagtaaattaatataa 2352 0.4643 MAVGTKSGGEAEKQAARDLEFVDMECEVELQGGDLHAGVVTEPNPVGFGTMEDAHALAVAEREMWLNSDQDEFLGVNDASMFYADFPPLPDFPCMSSSSSSSSSAPPLPVKTITCSTTTTTTTSSSSSSSSWAVLKSDVEEDAEKNHCNRYMQHQQRHDQLDATALSSTASMEFSQQHHPDPGLGGTVGECMDDVMDTFGYMDLLEANDFFDPASIFQNEENENPLVEFATLEEQVPLIEVEQHAMVRDEGTKEEEDHRVPVCEEIQGEEEGGDDGSVDDEMSKVFLEWLKFNKDSVSANDLRNVKLKKATIESAARRLGGGREAMKQLLKLILEWVQTSHLQNKRRKENTGNVNNALQAQFPDPSGQNNQTTHTGSFAPESNACFNNQTPWLSPQPYGTDQAPLMVPPQPFPQPMVGYVGDPYTSGAASNNITASHNHNNPYQPGADQYHMLESAHSWPHSQFNVASHYSQSFGDNGLFPHGSFGGYGNNQYPYQFFHGPGDRLMRLGPSATKEARKKRMARQRRFLSHHRHHNSNHHQNQGSDPHARLGSDNCTTVMAATHTNPAANWMYWHAMAGGVAAPLAPVVPAEPPAGQPAVDRSAMQTQNCHQGRVVSDRRQGWKPEKNLRFLLQKVLKQSDVGSLGRIVLPKKEAETHLPELEARDGISITMEDIGTSRVWNMRYRYWPNNKSRMYLLENTGDFVRANGLQEGDFIVIYSDVKCGKFMIRGVKVRQQGVKPETRKAGKSQKNQHGTNAATTAGTAANNATLSFPKPKAENSKLI 783
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1348 783 ProSiteProfiles B3 DNA-binding domain profile. 632 734 IPR003340 GO:0003677
Ssu3g1348 783 MobiDBLite consensus disorder prediction 344 379 - -
Ssu3g1348 783 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 48 762 - -
Ssu3g1348 783 MobiDBLite consensus disorder prediction 737 783 - -
Ssu3g1348 783 Gene3D - 628 746 IPR015300 -
Ssu3g1348 783 MobiDBLite consensus disorder prediction 600 614 - -
Ssu3g1348 783 MobiDBLite consensus disorder prediction 592 618 - -
Ssu3g1348 783 MobiDBLite consensus disorder prediction 349 379 - -
Ssu3g1348 783 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 48 762 IPR044800 GO:0003700
Ssu3g1348 783 SUPERFAMILY DNA-binding pseudobarrel domain 631 727 IPR015300 -
Ssu3g1348 783 SMART B3_2 632 732 IPR003340 GO:0003677
Ssu3g1348 783 MobiDBLite consensus disorder prediction 749 774 - -
Ssu3g1348 783 CDD BfiI_C_EcoRII_N_B3 630 731 - -
Ssu3g1348 783 MobiDBLite consensus disorder prediction 531 552 - -
Ssu3g1348 783 Pfam B3 DNA binding domain 633 729 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1348 Ssu-Chr3 33784727 33788880 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g1348 62 765 B3 DNA Binding Superfamily AT3G24650 47.530 4.57e-167 498
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Ssu3g1348 B3 3.6e-18 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1348 - - gmx:100795226 1194.49