Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1347 ATGAAAAGCCAACAAGAAGACTTTGAGCTACCTTTGTTTGACCTTGCCTCAATAGCACATGCTACAAATCACTTCTCAAATCACAATAAGCTTGGCGAAGGTGGTTTTGGGCCTGTATATAGGGGAACACTAACAAGTGGACAAGAAATAGCGGTTAAGAGGCTTTCACAAACATCTAGACAAGGATTGAAAGAATTTAAGAATGAGGTTATGTTATGTGCCGAACTTCAACATCGAAATCTTGTTAAAGTTCTTGGATGTTGCATTCAAGAAGATGAGAAATTACTCATATACGAGTATATGGCCAACAAAAGCTTAGACTTCTTTCTATTTGATTCTAATCGAAGCCAACTTCTTGACTGGCCTAAGCGCTTCTGCATTATAAATGGAATTGCTCGGGGACTACTTTATCTTCATCAAGACTCAAGACTAAGGATCATACATAGAGATCTTAAGGCAAGTAATGTTTTATTAGATAATGAAATGAACccaaaaatttcagattttggcTTAGCTCGAATGTGTGGAGGTGATCAAATTGATGGAAAAACAAGCAGAGTAGTTGGAACATATGGTTATATGGCTCCTGAATATGCTCTTGATGGAATATTTTCCACCAAATCAGATGTGTTTAGCTTTGGCATATTATTGCTAGAGATAGTAAGTGGCAAGAAAAATAGCAGGCTCTTCTATCCAAATGACAACAATAATCTTATTGGGCATGCATGGAGATTGTGGAAAGACGATAATCTAATGCAAGTCATTGACGCTAGTTTGGAGGACTCTTGCATTCTATATGAGGCCTTGCGTTGCATTCATATTGGTCTTTTATGTGTGCAACATCATCCTAATGATAGGCCAAATATGGCATCTGTGGTCGTATTATTGAGCAACGAGAATGCGTTACCTCTACCAAAGGATCCTAGCTACTTCATCAATGACATCTCAACTGAAAGAGAATCTAATTCTGAGAACTTGACGTCCACCTCTGTTAATGACCTCACTATCTCTATGTTGAGTGATAGATAG 1029 0.3722 MKSQQEDFELPLFDLASIAHATNHFSNHNKLGEGGFGPVYRGTLTSGQEIAVKRLSQTSRQGLKEFKNEVMLCAELQHRNLVKVLGCCIQEDEKLLIYEYMANKSLDFFLFDSNRSQLLDWPKRFCIINGIARGLLYLHQDSRLRIIHRDLKASNVLLDNEMNPKISDFGLARMCGGDQIDGKTSRVVGTYGYMAPEYALDGIFSTKSDVFSFGILLLEIVSGKKNSRLFYPNDNNNLIGHAWRLWKDDNLMQVIDASLEDSCILYEALRCIHIGLLCVQHHPNDRPNMASVVVLLSNENALPLPKDPSYFINDISTERESNSENLTSTSVNDLTISMLSDR 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1347 342 PIRSF ILK 16 246 - -
Ssu3g1347 342 PIRSF ILK 270 299 - -
Ssu3g1347 342 Gene3D Phosphorylase Kinase; domain 1 1 100 - -
Ssu3g1347 342 CDD STKc_IRAK 31 293 - -
Ssu3g1347 342 Gene3D Transferase(Phosphotransferase) domain 1 101 303 - -
Ssu3g1347 342 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 2 333 - -
Ssu3g1347 342 ProSitePatterns Serine/Threonine protein kinases active-site signature. 146 158 IPR008271 GO:0004672|GO:0006468
Ssu3g1347 342 SMART serkin_6 25 296 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g1347 342 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 2 333 - -
Ssu3g1347 342 Pfam Domain of unknown function (DUF3403) 297 340 IPR021820 GO:0004674
Ssu3g1347 342 Pfam Protein tyrosine and serine/threonine kinase 27 294 IPR001245 GO:0004672|GO:0006468
Ssu3g1347 342 ProSiteProfiles Protein kinase domain profile. 25 302 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g1347 342 SUPERFAMILY Protein kinase-like (PK-like) 8 316 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1347 Ssu-Chr3 33680038 33681427 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g1347 13 342 Receptor kinase-like Gene Family AT4G23150 53.412 4.19e-128 379
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Ssu3g1347 PK_Tyr_Ser-Thr 9.8e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1347 - - gmx:100786696 625.935