Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1345 ATGGTTTATACTTCCATCCCAGCATATATTGATCCAGCCAACTGGCAGCAACAGCAACCAAATCACCAGCAGCCGGGCAACAACGCTGCTGCCAGCTCCCACCTTATTATTCCACCACCGATACAACCACCACCAGCACCGCCATCACAACCACATGGACTCGGCGGTAGCGCTACCGCCGGGTCCATCAGGCCTGGTTCGATGGCGGACAGGGCCAGGATGGCCAACATACCCATGCAGGAAGCTCCACAAAAGTGTCCAAGATGTGAATCCAGCAACACAAAGTTTTGCTACTTCAACAACTACAGCCTCTCTCAGCCCCGCCACTTCTGCAAGGCCTGTAGAAGGTACTGGACTCGCGGCGGCGCCTTGAGGAACGTCCCCGTCGGGGGCGGCTGCCGGAGGAACAAGAGGAGTAGAGGAAGCTCCAGCAGCAACACCAGGTCGCCGGCAAACTCCGATCGCCAAACGGCGAGTGCCGGTTCCGCTTCCACAACCAGTGGCTCTTCTTCTGCCGACATGGTGGCCGGTCTTGGCGGCACTCCGGTGCCGCCGTCTCTTAGATTCATGGCTCCATTGCATCAACTCGGTGATCACCAccttggtggtggtggtggagaaaTAGGCTTAAACTATGGCTTGAACTATGGCGCAATTTCGGGTCCAATGGGAGGAATAGGAGACTTGAATTTCCACATAGGAAACGCTTTGAGTGGTGGTGGTTCTGTGCTGTCTGGTTTGGACCAATGGAGGGTGCCACAAACTCACCAATTTCCCTTCTTGTCTGGTTTGGAAGCTTCTTCATCACATGGGTTGTACCCATTTGaaggtggtagtggtggtgatggctATGGTGGCACTCCCATTAAGGTTTCAACTTCTAGTGTGATGTCTCAGCTTGCTTCTGTGAAAATGGAAGACAATAATCAGGAGCTTGGTTTGCCTAGACAGTTCTTGGGAGTCAATAATAATCCCAATACAAGTGAGCAATATTggagtggtggtggtggtggtgccacTTCTGCTTGGACTGATCTTTCTGCTTTTAGCTCTTCTTCCACTACTAGTCACCCACTATAG 1080 0.488 MVYTSIPAYIDPANWQQQQPNHQQPGNNAAASSHLIIPPPIQPPPAPPSQPHGLGGSATAGSIRPGSMADRARMANIPMQEAPQKCPRCESSNTKFCYFNNYSLSQPRHFCKACRRYWTRGGALRNVPVGGGCRRNKRSRGSSSSNTRSPANSDRQTASAGSASTTSGSSSADMVAGLGGTPVPPSLRFMAPLHQLGDHHLGGGGGEIGLNYGLNYGAISGPMGGIGDLNFHIGNALSGGGSVLSGLDQWRVPQTHQFPFLSGLEASSSHGLYPFEGGSGGDGYGGTPIKVSTSSVMSQLASVKMEDNNQELGLPRQFLGVNNNPNTSEQYWSGGGGGATSAWTDLSAFSSSSTTSHPL 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1345 359 MobiDBLite consensus disorder prediction 16 31 - -
Ssu3g1345 359 ProSitePatterns Zinc finger Dof-type signature. 86 122 IPR003851 GO:0003677|GO:0006355
Ssu3g1345 359 PANTHER DOF ZINC FINGER PROTEIN DOF3.6 5 355 - -
Ssu3g1345 359 MobiDBLite consensus disorder prediction 37 51 - -
Ssu3g1345 359 MobiDBLite consensus disorder prediction 16 65 - -
Ssu3g1345 359 Pfam Dof domain, zinc finger 83 138 IPR003851 GO:0003677|GO:0006355
Ssu3g1345 359 ProSiteProfiles Zinc finger Dof-type profile. 84 138 IPR003851 GO:0003677|GO:0006355
Ssu3g1345 359 MobiDBLite consensus disorder prediction 128 178 - -
Ssu3g1345 359 MobiDBLite consensus disorder prediction 137 174 - -
Ssu3g1345 359 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 5 355 IPR045174 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1345 Ssu-Chr3 33492431 33493676 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g1345 1 352 C2C2-Dof Transcription Factor Family AT2G37590 41.463 6.29e-63 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Ssu3g1345 zf-Dof 5.1e-32 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g1345 3 33492431 33493676 Ssu3g1345 3 33492431 33493676 ECH