Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1344 ATGCTAACAGAAGCTGATGGGGAGATGAGGGACGAGGCATTGGCAATAATGGCTGTGGTAGTTAGCCATCCTGATGGAAAAGCAGCAATTGGATCTATGAATGCTGTGTCCACTTTGGTGGAATTAATCAGTAATGGATCTCCTAGGAACAAAGAGAATGCAACTTCGGTGTTGGTGCTCCTCTGCAAAGGAGATCCTCTACATTTGTCAATTGTCAGTTCACTTGGGGTGATCAGTCCTCTCTTGGACCTGGCAGAAAATGGTTCAGAAAGGGGCAAGCGGAAAGCTTCCCAGCTTCTAGAGTTGATAGGAAACCATTGTGAATATACTGGGAAAACTGTCAACTAG 348 0.454 MLTEADGEMRDEALAIMAVVVSHPDGKAAIGSMNAVSTLVELISNGSPRNKENATSVLVLLCKGDPLHLSIVSSLGVISPLLDLAENGSERGKRKASQLLELIGNHCEYTGKTVN 115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1344 115 Gene3D - 1 113 IPR011989 -
Ssu3g1344 115 Pfam Armadillo/beta-catenin-like repeat 24 62 IPR000225 GO:0005515
Ssu3g1344 115 SUPERFAMILY ARM repeat 2 108 IPR016024 -
Ssu3g1344 115 PANTHER U BOX DOMAIN-CONTAINING 1 103 - -
Ssu3g1344 115 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 1 103 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1344 Ssu-Chr3 33449232 33449579 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g1344 1 113 U-box Gene Family AT3G46510 58.407 2.20e-37 131
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1344 - - pvu:PHAVU_008G099500g 188.348