Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1343 ATGTTGATAGACTGCCTTTATACTCATTTTACTTCAGGGGAGCTTCGACTTCTTGCCAAGCAAAATGGTCAAAATCGAATGCTGATTGCGGAAGCTGGTGCTATACCCCACCTTGTTGATCTCCTCTATGCACCTGATGCTGGCACCCAAGAGCATGCAGTTACTGCTCTTCTGAACTTGTCTATCTATGTGGATAATAAAGAGCGCATCATGGCTTCTGAGGCTGTGCCTGGCATCCTTCACGTGCTTGAAAATGGTAGTATGGAAGCTCGGGAAAATGCAGCAGCCACCTTTTCAGCCTCTCTGGGGTGGATGAGAACAGAGTGGCAATTGGTGCATCTGGAGCAATCCAAGCATTAG 360 0.475 MLIDCLYTHFTSGELRLLAKQNGQNRMLIAEAGAIPHLVDLLYAPDAGTQEHAVTALLNLSIYVDNKERIMASEAVPGILHVLENGSMEARENAAATFSASLGWMRTEWQLVHLEQSKH 119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1343 119 Pfam Armadillo/beta-catenin-like repeat 24 61 IPR000225 GO:0005515
Ssu3g1343 119 PANTHER U BOX DOMAIN-CONTAINING 11 99 - -
Ssu3g1343 119 Gene3D - 9 102 IPR011989 -
Ssu3g1343 119 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 11 99 - -
Ssu3g1343 119 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 33 75 IPR000225 GO:0005515
Ssu3g1343 119 SUPERFAMILY ARM repeat 14 99 IPR016024 -
Ssu3g1343 119 SMART arm_5 22 62 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1343 Ssu-Chr3 33448744 33449103 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g1343 32 98 U-box Gene Family AT3G46510 40.299 7.92e-08 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1343 - - pvu:PHAVU_008G099500g 149.828