Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1342 ATGGCGGAAACGGATCCTTTTCGGGTGCTCCGGAACCTGACGCGAATCGCGACCCAGATCTCGAACCTCTCCGCCTTCAAGCCCGTCATCAAGACCCAATGCTGCGACCTCAGTCGCAGAATAAGGTTCCTCACTCCCCTCTTCCTCGAATTGCAGGACGACGTCGTGTCGAGCCGCGCGGTTCCCTTCGACGCGCTTGCGTCGCTCGAAGACGCTCTCTTCAAGGCCAAGGAACTGCTCCAATTCGCCACCCGCGGAAGCCAGGTTTTCATGATACTGGAGCGAGAGCAAGTTAAGCACAAGTTCATTGATGTTGCTGTTCGTTTTGAACATGCTATAAGCAAGATCTCCTTTGACGAGCTTGATGTTTCTGAAGAAATCAAGGAGCAGGTTGCACTTGTGACTACTCAGTTTAGAAAAGCCAAAGAGCAGTTTGATCCATTGGGTCTTCAGCTTTATGAGCACCTGTTGTCTGTTTGCAACCAGAGATATGATGTGAATACTGAAACTGCTGAACTACGTTTAATCTGTGAAAAGCTACAATTTCTCAATGTGGATGACATCAAACAAGACTCACTCGCTCTACAAAAGATGGTTGTCGAGAGGGGTGGCCGTTCTCAGAAAAGCATATGGGATGTGGCATTATTGGTGCTGAAAAAAATCCAAGATTTCTTGGTGATGGAATCTGGAAACAATATTGTGTTGCCAAGTGAGGACTTCTCTCAACATACTGATGAGCTATGTGTGAAACTATGTCCACAATCACTAGTTATACCTGATGAGTTTCGCTGCTCTATATCTCTAGAGCTAATGAAAGATCCTGTTATCATTTGCACAGGGCAGTTGCTAGTTTGA 855 0.4667 MAETDPFRVLRNLTRIATQISNLSAFKPVIKTQCCDLSRRIRFLTPLFLELQDDVVSSRAVPFDALASLEDALFKAKELLQFATRGSQVFMILEREQVKHKFIDVAVRFEHAISKISFDELDVSEEIKEQVALVTTQFRKAKEQFDPLGLQLYEHLLSVCNQRYDVNTETAELRLICEKLQFLNVDDIKQDSLALQKMVVERGGRSQKSIWDVALLVLKKIQDFLVMESGNNIVLPSEDFSQHTDELCVKLCPQSLVIPDEFRCSISLELMKDPVIICTGQLLV 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1342 284 SUPERFAMILY RING/U-box 258 281 - -
Ssu3g1342 284 Pfam U-box domain 258 281 IPR003613 GO:0004842|GO:0016567
Ssu3g1342 284 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 7 281 - -
Ssu3g1342 284 PANTHER U BOX DOMAIN-CONTAINING 7 281 - -
Ssu3g1342 284 Gene3D - 7 119 IPR036537 GO:0007166
Ssu3g1342 284 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 254 283 IPR013083 -
Ssu3g1342 284 ProSiteProfiles U-box domain profile. 257 284 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1342 Ssu-Chr3 33441504 33444297 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g1342 11 281 U-box Gene Family AT3G46510 36.364 9.00e-57 191
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1342 - - pvu:PHAVU_008G099600g 420.624