Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1339 ATGGCGACGGCAACATACCCACCACCGCCACCATATTACAGACTTTACAAGGATTACTTGCAAGACCCTAACTCTGCACCTGAGCCTCCACCTCCTATTGAAGGAACTTACGTTTGTTTCGGAGGCAATTACACTACTAGTGACGTTCTACCAAGCTTGGAAGAGCAAGGGGTACGCCAGCTCTATTCTAAGGGGCCTAATGTTGATTTCAAGAAGGAGTTGAGGTCACTTAATGGAGAGTTGCAACTACACATTTTGGAGCTTGCTGATATTCTTATTGAGAGACCATCACAGTATGCAAGGAGAGTAGAAGAAATTTCAACTGTATGCAAAAACTTACACCACCTTTTAAATTCACTGCGTCCTCATCAGGCAAGAGCAACATTGATTCACATTTTGGAACTTCAGATACAGCGCCGTAAACAAGCAGTGGAGGACATAAAgagGAGGAGAGAAGAAGCACGAAGGCTCCTTAACGAGTCCCTGGCAACATTTGATGGCCATTAG 507 0.4438 MATATYPPPPPYYRLYKDYLQDPNSAPEPPPPIEGTYVCFGGNYTTSDVLPSLEEQGVRQLYSKGPNVDFKKELRSLNGELQLHILELADILIERPSQYARRVEEISTVCKNLHHLLNSLRPHQARATLIHILELQIQRRKQAVEDIKRRREEARRLLNESLATFDGH 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1339 168 Coils Coil 130 164 - -
Ssu3g1339 168 SUPERFAMILY Mediator hinge subcomplex-like 66 159 IPR037212 GO:0016592
Ssu3g1339 168 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 7 2 167 IPR009244 GO:0003712|GO:0006357|GO:0016592
Ssu3g1339 168 Pfam MED7 protein 4 158 IPR009244 GO:0003712|GO:0006357|GO:0016592
Ssu3g1339 168 Gene3D - 60 159 IPR044888 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1339 Ssu-Chr3 33341332 33345617 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR MED7 Ssu3g1339 Med7 1.5e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1339 K15148 - gmx:100792250 301.212