Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g1331 ATGTGCACAATTACAGAACGTGCCACAGCTGGTTATGCATCCATGGCTACAATTGCTTACCTAATGTTTGGTGTGGAGGTTAGATCCCAGGTAACATTAAACCTGTCACTAAACAAAGTTAGCTCAAAAATAGCAATATATACTACCTTGGTCAATCCCCTGTCCAAGTTTGCTTTGATGATGACATTCATTACCGATGCTTTGGAAGAATTGCTTCCAAAGAGGTACAAGAATAGAGTCACCAGCATCTTAGTCAACACTCTCTTGATAATGAAACCTGCTATTGCATTGAGTCCATTGAAGCAAATGCGAAAGAAGGATAGAAGCATGAGAGGATGCCTAGCTCATGAAGTTCCGTAG 360 0.4083 MCTITERATAGYASMATIAYLMFGVEVRSQVTLNLSLNKVSSKIAIYTTLVNPLSKFALMMTFITDALEELLPKRYKNRVTSILVNTLLIMKPAIALSPLKQMRKKDRSMRGCLAHEVP 119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g1331 119 Pfam Transmembrane amino acid transporter protein 8 75 IPR013057 -
Ssu3g1331 119 PANTHER - 8 92 - -
Ssu3g1331 119 PANTHER OS05G0424000 PROTEIN-RELATED 8 92 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g1331 Ssu-Chr3 33115288 33116027 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g1331 1 95 Amino Acid or Auxin Permease AAAP Family AT3G28960 44.792 1.32e-21 86.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g1331 K15015 - gmx:100794374 123.635